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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00150
Bact-VirGWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00150
Identity
- Kingdom:
- phage
Quality
79.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-78
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c19A02 | 3.10.20.300 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain | 0.69 | 40.0 | 3.72e-01 | 75.4% | 46.2% |
| 2z8lA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.66 | 47.0 | 3.81e-01 | 75.4% | 89.7% |
| 4a55A01 | 3.10.20.770 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.64 | 43.0 | 2.74e-01 | 70.5% | 33.5% |
| 5mmjp00 | 3.30.1320.10 | Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 | 0.64 | 38.0 | 3.54e-01 | 75.4% | 45.0% |
| 3hhmA03 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.63 | 43.0 | 3.31e-01 | 70.5% | 74.5% |
| 2bbhA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.63 | 40.0 | 2.95e-01 | 82.0% | 25.2% |
| 2qejD01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.62 | 43.0 | 3.54e-01 | 73.8% | 86.4% |
| 3ro6C01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.61 | 38.0 | 3.19e-01 | 80.3% | 35.8% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.61 | 40.0 | 2.68e-01 | 80.3% | 17.9% |
| 4i2yA01 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.58 | 42.0 | 2.91e-01 | 80.3% | 66.5% |
| 3b7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 39.0 | 3.17e-01 | 82.0% | 36.7% |
| 5aj3P00 | 3.30.1320.10 | Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 | 0.57 | 37.0 | 3.07e-01 | 82.0% | 35.0% |
| 3ssoA01 | 3.30.1050.30 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › | 0.57 | 39.0 | 2.92e-01 | 72.1% | 66.2% |
| 2g2sA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.56 | 36.0 | 3.55e-01 | 80.3% | 60.9% |
| 2pslA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.56 | 40.0 | 2.82e-01 | 77.0% | 94.9% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.56 | 34.0 | 3.52e-01 | 78.7% | 64.9% |
| 4hhvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 34.0 | 2.96e-01 | 86.9% | 35.0% |
| 3if8A02 | 2.20.25.230 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.56 | 37.0 | 3.67e-01 | 83.6% | 63.2% |
| 2dd7A00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.55 | 38.0 | 2.72e-01 | 73.8% | 94.9% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.55 | 35.0 | 3.46e-01 | 80.3% | 60.0% |
| 1buqA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 39.0 | 3.14e-01 | 82.0% | 37.6% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.55 | 38.0 | 3.12e-01 | 73.8% | 75.0% |
| 3p06A00 | 3.30.230.110 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.54 | 39.0 | 2.73e-01 | 75.4% | 91.8% |
| 3o2iA00 | 3.30.70.2710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 38.0 | 3.40e-01 | 75.4% | 72.0% |
| 1g5hA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 41.0 | 2.68e-01 | 83.6% | 72.3% |
| 3i9xA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.54 | 43.0 | 3.37e-01 | 96.7% | 80.9% |
| 1wqsA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 38.0 | 3.25e-01 | 75.4% | 86.4% |
| 1uisA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.54 | 39.0 | 2.78e-01 | 82.0% | 95.1% |
| 6kd0A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 39.0 | 2.45e-01 | 77.0% | 21.7% |
| 3ai4A00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.53 | 37.0 | 2.56e-01 | 75.4% | 82.4% |
| 4dgwC00 | 2.60.40.2690 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 36.0 | 2.75e-01 | 88.5% | 30.5% |
| 4bqqB02 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.52 | 37.0 | 2.58e-01 | 73.8% | 51.1% |
| 3ga2A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.52 | 36.0 | 2.52e-01 | 73.8% | 81.8% |
| 3akoC00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.52 | 35.0 | 2.76e-01 | 72.1% | 89.9% |
| 5r4qA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.52 | 38.0 | 2.85e-01 | 83.6% | 70.5% |
| 4dkmA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.52 | 36.0 | 2.56e-01 | 73.8% | 96.2% |
| 2nbmA00 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.52 | 36.0 | 2.97e-01 | 72.1% | 73.9% |
| 1o7iB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 38.0 | 3.23e-01 | 86.9% | 67.5% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3291254 | 2004.1.1.286 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TraG-D_C | 0.67 | 46.0 | 2.65e-01 | 70.5% | 11.1% |
| 2393519 | 327.6.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Germane | 0.67 | 46.0 | 3.44e-01 | 70.5% | 32.4% |
| 3956463 | 321.1.1.0 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase | 0.67 | 46.0 | 2.96e-01 | 80.3% | 16.9% |
| 3280179 | 2004.1.1.552 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C | 0.66 | 45.0 | 2.64e-01 | 70.5% | 12.2% |
| 3218103 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 43.0 | 3.68e-01 | 70.5% | 93.3% |
| 4932428 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.60 | 39.0 | 3.74e-01 | 82.0% | 58.6% |
| 5062029 | 210.2.1.3 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C_2 | 0.58 | 44.0 | 2.97e-01 | 85.2% | 41.9% |
| 3615476 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.58 | 42.0 | 2.69e-01 | 80.3% | 62.8% |
| 4605820 | 268.1.1.5 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › MycE_N | 0.58 | 39.0 | 2.97e-01 | 72.1% | 68.0% |
| 4419486 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.57 | 40.0 | 3.11e-01 | 73.8% | 79.3% |
| 5048020 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 43.0 | 2.71e-01 | 82.0% | 66.7% |
| 3701914 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 45.0 | 3.84e-01 | 85.2% | 57.9% |
| 3280105 | 211.1.1.6 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_3 | 0.55 | 40.0 | 2.89e-01 | 85.2% | 27.6% |
| 2490256 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.55 | 35.0 | 3.44e-01 | 80.3% | 59.1% |
| 3696190 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 38.0 | 3.12e-01 | 73.8% | 100.0% |
| 3653704 | 2498.1.1.91 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › TAF2_3rd | 0.55 | 39.0 | 2.63e-01 | 98.4% | 18.1% |
| 3596406 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 38.0 | 2.84e-01 | 73.8% | 83.1% |
| 4862281 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.54 | 38.0 | 2.70e-01 | 75.4% | 96.3% |
| 4770305 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.54 | 37.0 | 3.71e-01 | 93.4% | 70.3% |
| 3714845 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 41.0 | 3.29e-01 | 83.6% | 64.8% |
| 4032348 | 2004.1.1.347 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_24 | 0.54 | 42.0 | 2.78e-01 | 83.6% | 21.2% |
| 4405445 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.54 | 34.0 | 3.29e-01 | 80.3% | 55.7% |
| 2898325 | 271.1.1.2 ↗ | beta barrels › GFP-like › GFP-like › GFP-like | 0.54 | 37.0 | 2.46e-01 | 75.4% | 95.8% |
| 3876259 | 2484.1.1.15 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 | 0.54 | 40.0 | 2.87e-01 | 82.0% | 74.7% |
| 308837 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.54 | 39.0 | 2.76e-01 | 80.3% | 93.6% |
| None | — | 0.54 | 37.0 | 2.57e-01 | 75.4% | 83.4% | |
| 401471 | 271.1.1.0 ↗ | beta barrels › GFP-like › GFP-like › GFP-like | 0.53 | 37.0 | 2.56e-01 | 75.4% | 82.4% |
| 3631272 | 221.1.1.51 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_C2 | 0.53 | 36.0 | 3.08e-01 | 70.5% | 87.6% |
| 3560838 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.53 | 43.0 | 2.53e-01 | 95.1% | 25.3% |
| 4975981 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.53 | 32.0 | 2.35e-01 | 80.3% | 20.8% |
| 3376255 | 2498.1.1.112 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1, TAF2_3rd | 0.53 | 41.0 | 2.57e-01 | 86.9% | 21.1% |
| 3743626 | 221.1.1.51 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_C2 | 0.52 | 36.0 | 3.03e-01 | 72.1% | 81.7% |
| 5012345 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.52 | 39.0 | 2.63e-01 | 82.0% | 42.7% |
| 4453085 | 7579.1.1.137 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › FrsA-like, Abhydrolase_6 | 0.52 | 39.0 | 2.37e-01 | 80.3% | 19.9% |
| 2526414 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.52 | 37.0 | 2.63e-01 | 78.7% | 92.1% |
| 3989857 | 706.2.1.0 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G | 0.51 | 37.0 | 2.95e-01 | 85.2% | 35.0% |
| 3282593 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.51 | 37.0 | 2.62e-01 | 82.0% | 51.7% |
| 3404903 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.51 | 44.0 | 3.15e-01 | 98.4% | 68.2% |
| 3439369 | 11.1.1.837 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TAF2_3rd | 0.51 | 37.0 | 2.53e-01 | 78.7% | 33.9% |
| 3534592 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 34.0 | 3.54e-01 | 80.3% | 78.2% |
| 3815039 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.50 | 34.0 | 2.56e-01 | 72.1% | 81.7% |
| 3256098 | 210.1.2.6 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Phospholip_B | 0.50 | 38.0 | 2.24e-01 | 83.6% | 81.6% |