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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00199

Bact-Vir

GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00199

Identity

Kingdom:
phage

Quality

86.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-147
PDB
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q2eB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 45.0 3.94e-01 100.0% 57.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4073606 3703.1.1.0 a/b three-layered sandwiches › HSP90 C-terminal a/b domain › HSP90 C-terminal a/b domain › HSP90 C-terminal a/b domain 0.80 57.0 4.79e-01 100.0% 46.1%
5053445 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.76 55.0 5.31e-01 100.0% 66.3%
3735005 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.59 55.0 4.66e-01 100.0% 62.2%
4241931 225.1.1.7 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.56 46.0 4.00e-01 100.0% 57.7%
3333293 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 27.0 3.69e-01 71.0% 100.0%
D2 high residues 321-418
PDB
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jiuA00 3.30.2010.10 Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" 0.76 61.0 5.95e-01 83.7% 78.1%
1g12A00 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.75 65.0 5.40e-01 92.9% 94.6%
4jixB00 3.30.2010.10 Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" 0.71 58.0 5.70e-01 90.8% 81.7%
1h19A02 3.30.2010.30 Alpha Beta › 2-Layer Sandwich › Zincin-like › 0.70 53.0 5.35e-01 79.6% 100.0%
3hbvP01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.69 56.0 4.98e-01 86.7% 77.5%
4wz9A02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.65 56.0 4.18e-01 96.9% 86.2%
4kx7A02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.64 55.0 4.16e-01 98.0% 87.6%
1ii2B01 3.40.449.10 Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 0.62 50.0 4.05e-01 85.7% 68.5%
1ka2A00 1.10.1370.30 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.61 55.0 3.52e-01 100.0% 83.1%
3l3bA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.61 44.0 3.48e-01 76.5% 97.1%
3dwcA00 1.10.1370.30 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.61 55.0 3.46e-01 100.0% 83.6%
5e3xA00 1.10.1370.30 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.60 54.0 3.42e-01 100.0% 83.0%
2vrnA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.60 44.0 3.61e-01 78.6% 94.1%
1qvvA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.59 42.0 3.19e-01 74.5% 97.0%
4fgmA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.59 51.0 3.79e-01 99.0% 88.7%
3bhnA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.56 42.0 3.34e-01 80.6% 89.7%
4mozD00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 46.0 3.31e-01 94.9% 87.5%
1uqtA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 38.0 2.93e-01 75.5% 97.5%
4k2hD00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.53 44.0 3.62e-01 92.9% 90.9%
4gdhA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.53 44.0 3.60e-01 93.9% 93.2%
3cyfA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.52 43.0 3.55e-01 92.9% 91.4%
3f5dA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.52 43.0 3.46e-01 90.8% 86.5%
3mgkB00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.52 43.0 3.44e-01 91.8% 83.6%
4xllA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.51 41.0 3.42e-01 88.8% 92.4%
3fseA01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.51 43.0 3.50e-01 94.9% 84.8%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4194668 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.77 69.0 6.79e-01 96.9% 100.0%
5063243 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.77 62.0 5.74e-01 89.8% 69.2%
4947544 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.77 65.0 5.63e-01 92.9% 60.7%
3839854 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.76 62.0 4.91e-01 90.8% 43.6%
4928093 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.76 63.0 6.08e-01 91.8% 78.2%
1030676 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.76 61.0 5.95e-01 83.7% 78.1%
4936590 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.76 63.0 5.32e-01 91.8% 55.5%
3957469 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.76 63.0 5.38e-01 90.8% 57.3%
3386105 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.76 63.0 5.72e-01 91.8% 66.9%
5054258 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.75 62.0 5.41e-01 93.9% 59.3%
4458442 2498.1.1.39 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.75 68.0 6.59e-01 99.0% 99.1%
4944719 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.75 61.0 5.16e-01 89.8% 54.2%
5031785 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.75 63.0 5.51e-01 91.8% 62.1%
4989311 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.75 61.0 5.14e-01 89.8% 54.2%
4967994 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.75 59.0 6.11e-01 87.8% 90.0%
4972072 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.75 65.0 5.52e-01 94.9% 84.4%
5006204 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.75 62.0 4.78e-01 91.8% 42.0%
4929588 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.74 61.0 5.15e-01 91.8% 53.8%
5055672 2498.1.1.39 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.74 61.0 6.03e-01 89.8% 92.4%
5018719 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.74 60.0 4.95e-01 90.8% 50.0%
5016438 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.74 61.0 5.21e-01 89.8% 56.1%
3838568 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.73 61.0 5.97e-01 91.8% 82.9%
3281391 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.72 64.0 4.49e-01 95.9% 63.4%
4983855 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.71 63.0 4.88e-01 95.9% 73.7%
4988454 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.71 57.0 5.72e-01 85.7% 84.0%
4519029 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.71 64.0 4.52e-01 98.0% 57.2%
3546292 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.71 61.0 4.24e-01 94.9% 80.6%
3860717 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.71 61.0 4.33e-01 93.9% 70.7%
3806861 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.71 64.0 4.67e-01 100.0% 83.4%
3974318 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.70 63.0 4.79e-01 98.0% 64.4%
5019353 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.70 63.0 4.81e-01 98.0% 72.7%
3239825 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.70 62.0 4.64e-01 96.9% 81.7%
4486950 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.70 63.0 4.25e-01 99.0% 62.2%
4953892 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.69 62.0 4.66e-01 100.0% 91.0%
1314423 2498.1.1.26 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M56 0.69 60.0 5.78e-01 92.9% 83.5%
2514242 2498.1.1.39 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.69 58.0 5.32e-01 91.8% 78.1%
3483369 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.69 62.0 4.41e-01 99.0% 74.0%
5014385 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.69 62.0 4.75e-01 99.0% 81.3%
3293257 2498.1.1.72 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › BSP 0.68 57.0 4.45e-01 90.8% 77.1%
5004191 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.68 56.0 4.35e-01 88.8% 54.3%
3414358 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.68 60.0 4.54e-01 100.0% 89.8%
3548868 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.68 59.0 4.36e-01 95.9% 72.5%
4929397 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.67 56.0 5.07e-01 88.8% 78.5%
4986205 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.67 57.0 4.46e-01 92.9% 58.6%
3997363 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.67 59.0 4.02e-01 98.0% 51.4%
3223774 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.67 58.0 4.33e-01 95.9% 79.2%
5069411 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.67 59.0 4.48e-01 99.0% 83.4%
3949528 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.66 56.0 4.82e-01 91.8% 64.5%
5065493 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.66 55.0 4.98e-01 90.8% 80.0%
3412163 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.66 59.0 4.42e-01 100.0% 81.6%
3991307 2498.1.1.112 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1, TAF2_3rd 0.66 57.0 3.89e-01 98.0% 61.1%
5014308 2498.1.1.161 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › eCIS_core 0.66 53.0 4.19e-01 89.8% 89.3%
3794159 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.65 52.0 4.48e-01 86.7% 88.7%
3711722 2498.1.1.37 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M64 0.65 55.0 4.13e-01 93.9% 90.4%
3933457 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.65 57.0 4.39e-01 100.0% 92.2%
5036683 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.64 51.0 4.69e-01 85.7% 81.5%
5048756 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.63 55.0 4.17e-01 98.0% 87.3%
4033720 2498.1.1.29 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 0.63 48.0 4.05e-01 79.6% 60.6%
4974758 2008.1.1.51 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › McrBC 0.63 44.0 3.83e-01 73.5% 89.7%
4937226 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.62 54.0 4.00e-01 96.9% 94.2%
3688297 2007.1.1.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.59 42.0 3.17e-01 73.5% 95.4%
4077351 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.59 44.0 4.47e-01 79.6% 78.9%
5010124 2498.1.1.24 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M61 0.59 51.0 3.82e-01 99.0% 81.2%
5001378 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.58 43.0 3.26e-01 76.5% 93.9%
4960251 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.57 41.0 3.73e-01 74.5% 94.7%
None 0.57 41.0 3.29e-01 74.5% 96.9%
3590104 2007.1.1.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › DJ-1_PfpI 0.53 43.0 3.49e-01 90.8% 85.6%
3390173 109.4.1.18 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.51 44.0 3.04e-01 98.0% 33.2%
D3 medium residues 148-242
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ipeB02 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.62 54.0 4.53e-01 97.9% 87.9%
1av5A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.56 44.0 4.19e-01 97.9% 71.7%
3l7xA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.55 43.0 3.72e-01 97.9% 51.6%
2eo4A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.55 43.0 3.73e-01 100.0% 54.4%
4n0rA03 2.60.40.3950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 32.0 3.10e-01 98.9% 51.8%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4073606 3703.1.1.0 a/b three-layered sandwiches › HSP90 C-terminal a/b domain › HSP90 C-terminal a/b domain › HSP90 C-terminal a/b domain 0.78 60.0 4.45e-01 81.1% 37.0%
3282393 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.66 54.0 4.74e-01 89.5% 82.1%
4151835 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.66 56.0 4.92e-01 93.7% 96.4%
3223062 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.65 57.0 4.77e-01 96.8% 100.0%
4151824 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.65 57.0 4.89e-01 98.9% 100.0%
3358676 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.64 55.0 4.53e-01 94.7% 82.9%
4424690 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.62 52.0 4.66e-01 93.7% 98.6%
3310887 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.61 49.0 4.55e-01 89.5% 96.0%
3968852 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.59 51.0 4.44e-01 96.8% 98.7%
3246975 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.55 33.0 2.66e-01 87.4% 30.0%
3734712 604.3.1.11 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.52 39.0 2.86e-01 82.1% 81.0%
D4 medium residues 243-319
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5b7hB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.70 48.0 4.31e-01 71.4% 81.5%
2z0fA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.70 48.0 4.11e-01 71.4% 62.3%
4i62A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.69 47.0 4.42e-01 70.1% 71.0%
2vd3A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.69 48.0 4.53e-01 71.4% 67.0%
4yb6A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.69 47.0 4.53e-01 71.4% 67.8%
4powA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.68 47.0 4.07e-01 71.4% 57.1%
2qmwA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.68 47.0 4.65e-01 71.4% 71.6%
5bmnA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.68 46.0 3.98e-01 70.1% 56.3%
5lomA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.68 46.0 4.44e-01 71.4% 71.4%
2y7iA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.66 45.0 4.28e-01 71.4% 69.1%
1p5dX03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.65 45.0 3.93e-01 71.4% 60.5%
6qp2A01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.65 44.0 3.18e-01 71.4% 50.4%
1tuoA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.65 44.0 3.90e-01 71.4% 60.7%
1wpwA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.65 44.0 2.92e-01 71.4% 24.7%
1kfiA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.64 43.0 3.73e-01 70.1% 54.8%
3p1tA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.64 44.0 3.26e-01 71.4% 51.0%
3ezsA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.63 43.0 3.09e-01 71.4% 48.5%
3luyA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.63 43.0 4.42e-01 71.4% 78.4%
3ktoA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 43.0 3.72e-01 70.1% 80.3%
1z7mE02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.63 43.0 4.21e-01 71.4% 72.6%
3hh1A00 3.40.1010.10 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain 0.62 42.0 3.78e-01 71.4% 72.6%
1fg7A01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.62 42.0 3.15e-01 71.4% 62.9%
3i3wA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.62 42.0 4.13e-01 70.1% 67.1%
4e5sA01 3.40.50.10740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Murein tetrapeptidase LD-carboxypeptidase, N-terminal domain 0.61 42.0 3.40e-01 71.4% 76.1%
1cnzA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.59 47.0 3.08e-01 87.0% 41.3%
1t57A00 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.59 40.0 3.12e-01 71.4% 81.1%
3flkA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.57 45.0 2.98e-01 87.0% 42.1%
1sr8A03 3.40.50.10720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CbiD-like domains 0.57 48.0 4.64e-01 98.7% 95.6%
3ndcA01 3.40.1010.10 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain 0.56 38.0 3.41e-01 70.1% 69.0%
2ziuB01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 38.0 3.13e-01 71.4% 88.6%
4jd0A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 38.0 2.78e-01 71.4% 84.1%
6u8yJ01 3.40.50.12280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 38.0 3.05e-01 71.4% 59.8%
2k2wA00 3.40.50.10980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nibrin, BRCT2 domain 0.55 38.0 3.40e-01 71.4% 88.3%
3eyeA00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.55 38.0 3.09e-01 70.1% 48.4%
2bb3A01 3.40.1010.10 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain 0.54 37.0 3.42e-01 71.4% 71.4%
6jimB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 44.0 3.72e-01 93.5% 87.2%
1toaA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.52 35.0 2.97e-01 70.1% 49.7%
4xjxA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 35.0 2.74e-01 71.4% 67.0%
3e8sA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 35.0 2.58e-01 70.1% 34.1%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3978384 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.74 50.0 3.52e-01 70.1% 28.9%
3516767 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.73 50.0 4.32e-01 72.7% 70.4%
1522282 7523.1.1.15 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.72 49.0 5.05e-01 71.4% 90.5%
4050925 7523.1.1.10 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › HisG 0.70 48.0 4.66e-01 71.4% 71.8%
4150529 7523.1.1.10 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › HisG 0.69 48.0 4.54e-01 71.4% 67.8%
1518743 7523.1.1.10 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › HisG 0.69 48.0 4.57e-01 71.4% 68.5%
3959586 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.69 48.0 4.64e-01 71.4% 71.8%
4152837 7523.1.1.10 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › HisG 0.68 47.0 4.26e-01 71.4% 58.1%
4992209 7573.1.1.2 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.68 46.0 3.80e-01 70.1% 97.9%
3641956 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.68 47.0 3.92e-01 71.4% 64.6%
4990663 7577.1.1.1 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.67 46.0 3.21e-01 71.4% 37.3%
3805671 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.67 45.0 3.96e-01 71.4% 59.2%
3385512 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.66 45.0 3.16e-01 70.1% 54.7%
5060196 7528.1.1.3 a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_III 0.66 45.0 4.01e-01 71.4% 63.5%
3711042 7528.1.1.3 a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_III 0.65 44.0 3.70e-01 70.1% 57.0%
3514583 7528.1.1.3 a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_III 0.64 43.0 3.80e-01 70.1% 57.5%
3336295 7528.1.1.4 a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › AMG1_III 0.64 44.0 3.34e-01 71.4% 57.9%
4977486 7523.1.1.10 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › HisG 0.64 44.0 3.76e-01 71.4% 48.8%
2804638 7577.1.1.1 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.64 44.0 3.02e-01 71.4% 49.1%
4998370 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.59 40.0 2.92e-01 71.4% 84.2%
2129708 2484.3.1.0 mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain 0.59 41.0 3.28e-01 71.4% 56.6%
5064859 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.58 39.0 2.84e-01 70.1% 82.5%
5042219 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.56 38.0 3.38e-01 71.4% 58.3%
5080764 7518.1.1.0 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like 0.54 37.0 3.22e-01 71.4% 58.3%
5019216 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.53 37.0 2.85e-01 75.3% 76.4%
4028202 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.53 35.0 3.02e-01 70.1% 70.4%
4316198 7570.1.1.1 a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C 0.52 39.0 3.28e-01 80.5% 84.9%
3956723 301.1.1.6 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › MRM3-like_sub_bind 0.52 42.0 3.96e-01 88.3% 94.7%
168856 2003.1.5.79 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.51 35.0 2.58e-01 70.1% 34.1%