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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00247
Bact-VirGWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00247
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-130
Domain cluster:
rep: ON287372.1__UQT02932.1__TOTORO_00690__00069__D17-122
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1o6eA00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.70 | 65.0 | 5.16e-01 | 100.0% | 60.9% |
| 1wosA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.68 | 40.0 | 4.60e-01 | 99.2% | 80.2% |
| 1at3A00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.67 | 62.0 | 4.98e-01 | 100.0% | 54.4% |
| 1nrkA03 | 2.40.30.160 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.64 | 39.0 | 3.87e-01 | 99.2% | 57.4% |
| 1vq8S00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.62 | 32.0 | 3.81e-01 | 77.3% | 72.8% |
| 2yweA04 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 31.0 | 3.23e-01 | 79.8% | 50.9% |
| 1q5yC00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.60 | 33.0 | 3.82e-01 | 78.2% | 75.6% |
| 6lxgA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 33.0 | 4.03e-01 | 80.7% | 89.0% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 32.0 | 3.67e-01 | 100.0% | 75.6% |
| 1zu0A02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.57 | 38.0 | 4.00e-01 | 93.3% | 74.8% |
| 3hx9B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 38.0 | 4.15e-01 | 90.8% | 83.7% |
| 7cayA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.55 | 37.0 | 3.96e-01 | 95.8% | 81.0% |
| 4pfyA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.55 | 37.0 | 3.47e-01 | 94.1% | 55.8% |
| 2ahoB03 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.55 | 38.0 | 4.23e-01 | 91.6% | 96.6% |
| 3nlcA01 | 3.30.70.2700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 34.0 | 3.94e-01 | 98.3% | 96.1% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 41.0 | 4.25e-01 | 91.6% | 88.1% |
| 2jheA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 31.0 | 3.64e-01 | 97.5% | 85.2% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 42.0 | 3.99e-01 | 91.6% | 99.3% |
| 3zs6A02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.51 | 38.0 | 3.85e-01 | 96.6% | 77.9% |
| 1xmbA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 37.0 | 3.97e-01 | 99.2% | 91.1% |
| 1vq0A01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.50 | 38.0 | 3.09e-01 | 79.8% | 92.3% |
| 5h5zA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 31.0 | 3.49e-01 | 100.0% | 83.0% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3585229 | 50.1.1.2 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S77 | 0.91 | 88.0 | 8.21e-01 | 100.0% | 92.1% |
| 4995675 | 50.1.1.0 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin | 0.91 | 87.0 | 7.59e-01 | 100.0% | 81.8% |
| 1933303 | 50.1.1.2 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S77 | 0.88 | 84.0 | 7.37e-01 | 100.0% | 80.1% |
| 5083161 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.78 | 72.0 | 6.74e-01 | 100.0% | 86.2% |
| 3286366 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.77 | 48.0 | 4.57e-01 | 100.0% | 54.1% |
| 4960055 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.74 | 68.0 | 6.49e-01 | 99.2% | 91.3% |
| 3284857 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.72 | 46.0 | 4.29e-01 | 100.0% | 51.3% |
| 5083920 | 50.1.1.0 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin | 0.71 | 67.0 | 6.29e-01 | 100.0% | 96.4% |
| 3165956 | 2007.2.4.10 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphoinositide phosphatase › Mu-like_Pro | 0.70 | 64.0 | 6.06e-01 | 98.3% | 93.6% |
| 3963908 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.70 | 37.0 | 4.65e-01 | 98.3% | 85.7% |
| 4215822 | 1.1.8.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel | 0.70 | 41.0 | 5.11e-01 | 99.2% | 97.1% |
| 3602442 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.69 | 58.0 | 6.05e-01 | 100.0% | 98.2% |
| 5038126 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.68 | 37.0 | 4.46e-01 | 99.2% | 81.3% |
| 3163706 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.65 | 47.0 | 4.90e-01 | 100.0% | 81.8% |
| 3741921 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.64 | 42.0 | 4.49e-01 | 95.8% | 75.2% |
| 2568840 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.64 | 45.0 | 4.71e-01 | 100.0% | 78.4% |
| 4409090 | 1.1.8.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel | 0.63 | 38.0 | 4.60e-01 | 99.2% | 94.7% |
| 4157473 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.61 | 39.0 | 3.83e-01 | 95.8% | 60.8% |
| 1150480 | 50.1.1.1 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 | 0.61 | 47.0 | 5.06e-01 | 81.5% | 96.1% |
| 5081333 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.60 | 33.0 | 3.98e-01 | 79.8% | 82.7% |
| 3256764 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 42.0 | 4.09e-01 | 95.8% | 68.5% |
| 3324420 | 11.1.1.122 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set | 0.58 | 41.0 | 4.22e-01 | 100.0% | 78.2% |
| 3506226 | 304.55.2.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like | 0.57 | 46.0 | 4.82e-01 | 99.2% | 95.5% |
| 5051224 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.56 | 33.0 | 4.07e-01 | 98.3% | 97.1% |
| 3404732 | 304.9.1.95 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4780 | 0.56 | 36.0 | 4.15e-01 | 98.3% | 93.8% |
| 3371896 | 11.1.1.122 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set | 0.56 | 39.0 | 3.97e-01 | 100.0% | 72.3% |
| 3606657 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 41.0 | 4.22e-01 | 100.0% | 80.9% |
| 5001314 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.55 | 40.0 | 3.20e-01 | 96.6% | 36.7% |
| 4557453 | 304.102.1.9 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N, DKCLD, TruB_C_2, Pus10_C | 0.55 | 39.0 | 3.15e-01 | 97.5% | 36.3% |
| 4591715 | 304.102.1.5 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 | 0.55 | 39.0 | 3.20e-01 | 96.6% | 37.9% |
| 3195155 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.55 | 33.0 | 3.98e-01 | 84.0% | 100.0% |
| 3172782 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 37.0 | 4.20e-01 | 98.3% | 97.6% |
| 4983446 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.53 | 36.0 | 3.86e-01 | 98.3% | 79.0% |
| 5044372 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.53 | 35.0 | 3.68e-01 | 100.0% | 72.7% |
| 4951845 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.53 | 34.0 | 4.00e-01 | 91.6% | 100.0% |
| 3995117 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 32.0 | 3.51e-01 | 98.3% | 72.6% |
| 3952812 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 33.0 | 3.72e-01 | 89.1% | 85.6% |
| 4947994 | 1036.1.1.0 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain | 0.52 | 34.0 | 3.63e-01 | 100.0% | 76.2% |
| 4945287 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.51 | 44.0 | 3.74e-01 | 95.8% | 73.0% |
| 3925312 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 41.0 | 3.77e-01 | 100.0% | 65.8% |
| 4255330 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.50 | 36.0 | 4.04e-01 | 91.6% | 100.0% |
| 4978332 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.50 | 32.0 | 3.68e-01 | 98.3% | 93.8% |