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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00248
Bact-VirGWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00248
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-68
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1icrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.75 | 55.0 | 3.76e-01 | 76.5% | 24.1% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 50.0 | 4.75e-01 | 73.5% | 74.4% |
| 2z3tA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.68 | 50.0 | 3.15e-01 | 79.4% | 33.0% |
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.66 | 45.0 | 3.53e-01 | 70.6% | 39.6% |
| 3ermB00 | 1.10.10.710 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like | 0.63 | 44.0 | 4.56e-01 | 80.9% | 78.1% |
| 1dmhA00 | 2.60.130.10 | Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase | 0.58 | 48.0 | 3.10e-01 | 94.1% | 19.7% |
| 3dsbA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 43.0 | 3.85e-01 | 83.8% | 78.2% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.56 | 42.0 | 3.96e-01 | 83.8% | 65.5% |
| 2b5dX01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.56 | 45.0 | 2.78e-01 | 86.8% | 70.0% |
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.52 | 38.0 | 3.89e-01 | 75.0% | 96.9% |
| 8d7hD01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.52 | 46.0 | 3.48e-01 | 100.0% | 87.3% |
| 2b3tB01 | 6.10.140.1980 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 40.0 | 4.16e-01 | 86.8% | 90.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4020548 | 7579.1.1.58 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF829 | 0.75 | 54.0 | 3.52e-01 | 77.9% | 17.6% |
| 3484935 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.68 | 50.0 | 3.34e-01 | 77.9% | 44.5% |
| 1715101 | 101.1.2.73 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82 | 0.67 | 46.0 | 3.61e-01 | 73.5% | 35.3% |
| 3885611 | 150.3.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine | 0.64 | 46.0 | 3.53e-01 | 76.5% | 85.6% |
| 3177607 | 109.4.1.163 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SYMPK_PTA1_N | 0.63 | 43.0 | 2.70e-01 | 70.6% | 17.6% |
| 3671252 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.61 | 45.0 | 3.88e-01 | 77.9% | 94.3% |
| 4976420 | 1074.1.1.0 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases | 0.60 | 49.0 | 4.22e-01 | 88.2% | 75.2% |
| 3482907 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.60 | 46.0 | 3.83e-01 | 80.9% | 74.8% |
| 4230647 | 150.3.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine | 0.58 | 45.0 | 3.55e-01 | 82.4% | 56.3% |
| 4042002 | 5068.1.1.1 ↗ | alpha bundles › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Cytochrom_B_C | 0.57 | 40.0 | 3.15e-01 | 76.5% | 51.5% |
| 4980470 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.57 | 41.0 | 3.73e-01 | 76.5% | 68.4% |
| 3724166 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.51 | 37.0 | 3.83e-01 | 77.9% | 90.8% |
D2
medium
residues 69-149
Domain cluster:
rep: MW452941.1__QRV71437.1__MEP301_gp09__00009__D78-159
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4esjA01 | 3.40.210.30 | Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › Dam replacing family, catalytic PD-(D/E)XK domain | 0.73 | 66.0 | 5.26e-01 | 100.0% | 63.5% |
| 3ndhA00 | 3.40.600.30 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › | 0.69 | 61.0 | 4.50e-01 | 100.0% | 53.3% |
| 4f0qD01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.65 | 57.0 | 4.01e-01 | 97.5% | 56.5% |
| 4iy0A00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.63 | 45.0 | 3.68e-01 | 75.3% | 55.9% |
| 2jbrA02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.60 | 48.0 | 4.56e-01 | 86.4% | 91.6% |
| 3fovA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.60 | 45.0 | 4.16e-01 | 79.0% | 79.4% |
| 3l0aA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.59 | 47.0 | 3.33e-01 | 87.7% | 41.4% |
| 1w07A02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.58 | 44.0 | 3.81e-01 | 85.2% | 84.7% |
| 4oc8A01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.58 | 49.0 | 3.73e-01 | 100.0% | 57.7% |
| 1bwzA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.57 | 46.0 | 3.92e-01 | 97.5% | 54.3% |
| 6u1vD02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.57 | 45.0 | 4.15e-01 | 88.9% | 92.6% |
| 6sshA01 | 3.40.50.11210 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Rap/Ran-GAP | 0.57 | 40.0 | 3.12e-01 | 75.3% | 43.8% |
| 2gzaB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 39.0 | 2.88e-01 | 71.6% | 80.3% |
| 2aneH00 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.55 | 44.0 | 4.09e-01 | 90.1% | 81.7% |
| 1ym5A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.55 | 43.0 | 3.70e-01 | 96.3% | 52.2% |
| 2egvA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.54 | 39.0 | 4.17e-01 | 85.2% | 93.9% |
| 2oap202 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 44.0 | 3.10e-01 | 92.6% | 62.1% |
| 6tdxG01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.53 | 43.0 | 3.19e-01 | 88.9% | 78.0% |
| 3g7kA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.53 | 46.0 | 3.52e-01 | 97.5% | 45.5% |
| 1q8mA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 37.0 | 3.30e-01 | 74.1% | 61.2% |
| 6z9uA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.52 | 36.0 | 3.57e-01 | 70.4% | 84.3% |
| 5k9aA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.52 | 39.0 | 2.99e-01 | 84.0% | 85.1% |
| 5ysnB02 | 3.40.50.11240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ethanolamine ammonia-lyase light chain (EutC) | 0.51 | 44.0 | 3.49e-01 | 100.0% | 56.2% |
| 3h49B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 36.0 | 2.50e-01 | 100.0% | 20.4% |
| 2akjA03 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.50 | 44.0 | 3.86e-01 | 100.0% | 77.6% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4284098 | 2008.1.1.198 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF6998 | 0.81 | 73.0 | 6.12e-01 | 100.0% | 60.8% |
| 3290988 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.67 | 49.0 | 4.53e-01 | 76.5% | 83.5% |
| 3454981 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.66 | 48.0 | 4.89e-01 | 77.8% | 98.8% |
| 4025748 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.64 | 46.0 | 3.55e-01 | 75.3% | 68.9% |
| 3269898 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.62 | 43.0 | 2.95e-01 | 72.8% | 43.9% |
| 3852890 | 10.12.1.47 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Tet_JBP | 0.60 | 50.0 | 3.25e-01 | 95.1% | 79.7% |
| 5057719 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.60 | 49.0 | 4.07e-01 | 91.4% | 51.4% |
| 3880583 | 10.12.1.47 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Tet_JBP | 0.60 | 50.0 | 3.22e-01 | 95.1% | 74.5% |
| 4058117 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.60 | 47.0 | 3.89e-01 | 97.5% | 48.6% |
| 3711310 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.59 | 40.0 | 2.92e-01 | 70.4% | 68.9% |
| 5058388 | 2007.15.1.19 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › DUF7768 | 0.59 | 40.0 | 3.62e-01 | 98.8% | 51.8% |
| 3412134 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.58 | 46.0 | 4.02e-01 | 85.2% | 97.6% |
| 3462526 | 2492.1.1.11 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 | 0.58 | 48.0 | 3.72e-01 | 97.5% | 80.0% |
| 4966648 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.58 | 47.0 | 3.86e-01 | 87.7% | 53.1% |
| 4512246 | 2004.1.1.615 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_23, AAA_29 | 0.57 | 39.0 | 2.38e-01 | 71.6% | 98.4% |
| 3770663 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.57 | 47.0 | 3.56e-01 | 91.4% | 51.8% |
| 3569802 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.56 | 47.0 | 3.57e-01 | 91.4% | 51.8% |
| 5036078 | 7592.1.1.5 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csx1_CARF | 0.56 | 44.0 | 3.10e-01 | 87.7% | 96.9% |
| 3925347 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.56 | 46.0 | 3.51e-01 | 91.4% | 51.8% |
| 5009807 | 7592.1.1.5 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csx1_CARF | 0.56 | 45.0 | 3.73e-01 | 88.9% | 80.7% |
| 5026772 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.54 | 46.0 | 2.97e-01 | 92.6% | 46.1% |
| 3279780 | 2008.1.1.20 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 | 0.54 | 48.0 | 3.61e-01 | 100.0% | 53.7% |
| 5023504 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.54 | 45.0 | 2.81e-01 | 92.6% | 35.2% |
| 4927613 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.53 | 45.0 | 2.78e-01 | 92.6% | 36.2% |
| 3706487 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.53 | 45.0 | 2.93e-01 | 98.8% | 43.6% |
| 4949871 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 37.0 | 2.87e-01 | 72.8% | 80.0% |
| 4171461 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 46.0 | 3.55e-01 | 97.5% | 79.5% |
| 3689206 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 46.0 | 3.77e-01 | 97.5% | 62.7% |
| 3933211 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 40.0 | 3.65e-01 | 84.0% | 93.9% |
| 3637223 | 4052.1.1.0 ↗ | beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like | 0.52 | 44.0 | 3.67e-01 | 100.0% | 77.5% |
| 3470570 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.52 | 42.0 | 3.78e-01 | 88.9% | 88.7% |
| 4019945 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.51 | 42.0 | 2.86e-01 | 98.8% | 56.8% |
| 4682148 | 7573.1.1.4 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase | 0.50 | 35.0 | 2.68e-01 | 72.8% | 33.8% |
| 5001313 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.50 | 34.0 | 2.43e-01 | 70.4% | 55.2% |