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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1XX__00278

Bact-Vir

GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00278

Identity

Kingdom:: phage

Quality

78.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-105

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01541.31 best	GIY-YIG	22.9	1.20e-04	69.5%	89.7%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2qsdB02	3.50.100.10	Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain	0.57	35.0	3.99e-01	82.9%	82.1%
2vqaA02	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.57	39.0	3.29e-01	70.5%	68.4%
4fw9A01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.54	44.0	3.27e-01	89.5%	70.6%
3bpkA01	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.53	40.0	3.36e-01	79.0%	91.1%
6l9iA01	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.53	36.0	3.07e-01	70.5%	66.1%
3nyiB01	3.40.50.10170	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.53	38.0	3.36e-01	75.2%	72.0%
4z85A00	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.52	39.0	3.18e-01	79.0%	79.7%
3fgeA01	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.51	39.0	3.31e-01	79.0%	93.6%
3e4vA01	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.51	39.0	3.29e-01	83.8%	48.9%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3365225	821.1.1.1 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG	0.89	61.0	5.76e-01	71.4%	60.8%
3666940	821.1.1.1 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG	0.88	61.0	5.78e-01	71.4%	61.7%
4974123	821.1.1.14 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797	0.84	53.0	5.51e-01	73.3%	68.0%
4016088	821.1.1.3 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172	0.76	52.0	5.23e-01	70.5%	80.0%
4929079	821.1.1.15 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508	0.73	50.0	5.27e-01	70.5%	79.8%
4996322	821.1.1.14 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797	0.67	49.0	4.98e-01	77.1%	76.2%
3735748	821.1.1.3 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172	0.61	50.0	4.23e-01	87.6%	80.6%
3615237	4121.1.1.0 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like	0.55	40.0	2.80e-01	76.2%	59.2%
4096792	1.1.5.10 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct	0.54	41.0	3.27e-01	79.0%	82.4%
5001166	301.1.1.2 ↗	a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3	0.53	41.0	3.83e-01	83.8%	64.4%
4524847	329.1.1.1 ↗	a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD	0.52	36.0	3.40e-01	71.4%	79.2%
4301629	213.1.1.0 ↗	a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat)	0.52	37.0	3.50e-01	76.2%	92.6%
1725861	1.1.5.10 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct	0.52	39.0	3.18e-01	79.0%	79.7%

D2 medium residues 106-180

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ng6A01	1.10.1510.10	Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain	0.62	42.0	3.94e-01	70.7%	79.1%
4xjxA04	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.59	46.0	3.19e-01	85.3%	48.1%
2daxA01	3.10.110.10	Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme	0.55	37.0	3.11e-01	70.7%	86.5%
2ac2A01	3.40.50.1400	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.54	38.0	2.96e-01	73.3%	36.1%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3866897	148.1.1.12 ↗	alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP	0.73	50.0	4.57e-01	73.3%	55.8%