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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00298
Bact-VirGWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00298
Identity
- Kingdom:
- phage
Quality
84.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-130
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5c68A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.61 | 33.0 | 3.51e-01 | 97.5% | 57.8% |
| 3e0rB01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.59 | 35.0 | 3.57e-01 | 97.5% | 59.7% |
| 3sk1C01 | 3.30.720.120 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.58 | 26.0 | 3.63e-01 | 77.9% | 90.7% |
| 1wjkA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 29.0 | 3.53e-01 | 96.7% | 74.4% |
| 3mdqA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.56 | 44.0 | 3.81e-01 | 82.8% | 55.6% |
| 1z9hA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 27.0 | 3.27e-01 | 96.7% | 68.8% |
| 3m1gA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 31.0 | 3.14e-01 | 100.0% | 55.9% |
| 3oajA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 34.0 | 3.25e-01 | 98.4% | 56.2% |
| 1g7sA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 45.0 | 3.72e-01 | 97.5% | 99.5% |
| 4pqhA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 28.0 | 3.06e-01 | 96.7% | 64.9% |
| 3qavA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 26.0 | 3.14e-01 | 96.7% | 75.9% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1214744 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.62 | 32.0 | 3.88e-01 | 82.8% | 76.9% |
| 5039760 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.61 | 32.0 | 4.00e-01 | 85.2% | 85.7% |
| 3496312 | 211.1.1.17 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › GLOD4_C | 0.61 | 29.0 | 4.06e-01 | 82.0% | 100.0% |
| 3988872 | 211.1.1.8 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › CppA_N | 0.60 | 31.0 | 3.91e-01 | 83.6% | 85.7% |
| 2845073 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.58 | 45.0 | 4.03e-01 | 83.6% | 59.0% |
| 3839290 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.58 | 41.0 | 4.55e-01 | 80.3% | 94.7% |
| 139186 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.56 | 44.0 | 3.81e-01 | 82.8% | 55.9% |
| 3726850 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.56 | 44.0 | 3.66e-01 | 82.8% | 55.2% |
| 3968382 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.54 | 33.0 | 3.22e-01 | 95.9% | 52.9% |
| 3610225 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 43.0 | 3.45e-01 | 87.7% | 94.6% |
| 5062584 | 3008.1.1.2 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DUF5915 | 0.54 | 30.0 | 3.42e-01 | 100.0% | 74.1% |
| 3589170 | 2485.1.1.3 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glutaredoxin | 0.53 | 27.0 | 3.28e-01 | 95.9% | 77.0% |
| 4093708 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.52 | 40.0 | 3.51e-01 | 82.8% | 53.8% |
| 4539199 | 309.1.1.1 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16 | 0.52 | 36.0 | 3.02e-01 | 72.1% | 68.0% |
| 3549954 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.52 | 36.0 | 2.73e-01 | 71.3% | 33.0% |
| 54732 | 4132.1.1.0 ↗ | alpha bundles › IpaD-like › IpaD-like › IpaD-like | 0.51 | 36.0 | 3.28e-01 | 73.8% | 76.6% |
| 5041512 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.50 | 28.0 | 3.50e-01 | 82.8% | 98.5% |
D2
high
residues 131-220
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mdqA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.61 | 53.0 | 4.28e-01 | 100.0% | 87.3% |
| 3w1oA00 | 3.40.1760.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › | 0.61 | 53.0 | 4.97e-01 | 100.0% | 93.9% |
| 3t57A02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.55 | 42.0 | 4.51e-01 | 93.3% | 100.0% |
| 2krhA00 | 1.10.10.1540 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain | 0.55 | 43.0 | 4.41e-01 | 93.3% | 90.6% |
| 2pbiA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 44.0 | 4.17e-01 | 88.9% | 88.5% |
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.52 | 37.0 | 3.89e-01 | 100.0% | 82.5% |
| 5nusA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.52 | 43.0 | 3.34e-01 | 91.1% | 81.0% |
| 2q1fA02 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.51 | 40.0 | 2.64e-01 | 84.4% | 80.6% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4957675 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.59 | 45.0 | 2.95e-01 | 83.3% | 21.4% |
| 3405434 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.59 | 48.0 | 3.71e-01 | 93.3% | 47.1% |
| 5050045 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.56 | 42.0 | 3.54e-01 | 78.9% | 64.7% |
| 3596228 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.56 | 40.0 | 3.72e-01 | 74.4% | 81.7% |
| 3309869 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 35.0 | 2.54e-01 | 77.8% | 22.4% |
| 3650388 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 41.0 | 3.05e-01 | 90.0% | 32.1% |
| 4318968 | 3636.1.1.3 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain › ARCH_RTEL1 | 0.51 | 43.0 | 3.36e-01 | 94.4% | 98.0% |
| 3512591 | 4177.1.1.1 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH | 0.51 | 28.0 | 2.06e-01 | 92.2% | 18.1% |
| 4473988 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.50 | 36.0 | 3.11e-01 | 75.6% | 75.9% |