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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00341
Bact-VirGWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00341
Identity
- Kingdom:
- phage
Quality
77.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 144-201
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dq3A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.85 | 77.0 | 5.35e-01 | 100.0% | 37.9% |
| 4o1sA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.83 | 76.0 | 5.31e-01 | 100.0% | 36.5% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.59 | 34.0 | 3.49e-01 | 98.3% | 58.9% |
| 1j71A01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.57 | 48.0 | 3.53e-01 | 100.0% | 56.6% |
| 3uepA00 | 2.30.330.10 | Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like | 0.53 | 30.0 | 2.68e-01 | 93.1% | 38.8% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4944478 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 73.0 | 5.74e-01 | 100.0% | 55.8% |
| 4821446 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 74.0 | 5.77e-01 | 100.0% | 50.0% |
| 4999896 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.81 | 73.0 | 5.61e-01 | 100.0% | 48.0% |
| 4999893 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.79 | 70.0 | 5.60e-01 | 100.0% | 55.3% |
| 5034399 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.62 | 51.0 | 4.04e-01 | 98.3% | 58.6% |
| 3982264 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.59 | 50.0 | 3.56e-01 | 94.8% | 96.6% |
| 3284171 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.57 | 46.0 | 3.61e-01 | 100.0% | 70.7% |
| 4000904 | 7516.1.1.69 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_92 | 0.55 | 43.0 | 2.73e-01 | 86.2% | 59.7% |
| 3965860 | 3523.1.1.1 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG | 0.53 | 39.0 | 3.44e-01 | 84.5% | 78.0% |
| 3588583 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.53 | 38.0 | 2.87e-01 | 98.3% | 31.0% |
| 5055307 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 3.32e-01 | 96.6% | 62.6% |
| 3820884 | 1.1.1.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_N | 0.51 | 40.0 | 3.12e-01 | 98.3% | 70.0% |
| 3174998 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.51 | 40.0 | 2.56e-01 | 100.0% | 23.8% |
D2
high
residues 208-250
Domain cluster:
rep: MF479730.1__ASU00677.1__X__00141__D128-168
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4e2tB00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.92 | 81.0 | 5.25e-01 | 100.0% | 24.3% |
| 1dq3A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.90 | 82.0 | 5.24e-01 | 100.0% | 24.3% |
| 4o1sA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.90 | 79.0 | 5.16e-01 | 100.0% | 24.7% |
| 1at0A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.89 | 80.0 | 5.40e-01 | 100.0% | 30.3% |
| 2jmzA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.88 | 76.0 | 5.02e-01 | 100.0% | 25.0% |
| 2lcjA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.88 | 76.0 | 4.91e-01 | 100.0% | 22.7% |
| 1am2A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.87 | 78.0 | 5.03e-01 | 100.0% | 25.4% |
| 2cw8A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.84 | 72.0 | 4.80e-01 | 100.0% | 24.9% |
| 5o9iA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.83 | 72.0 | 4.75e-01 | 100.0% | 24.6% |
| 4zgnB00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 51.0 | 3.96e-01 | 93.0% | 65.0% |
| 1kjzA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.62 | 49.0 | 4.02e-01 | 95.3% | 69.6% |
| 1jheA00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.62 | 45.0 | 3.31e-01 | 79.1% | 41.9% |
| 1ay9A00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.61 | 44.0 | 3.38e-01 | 79.1% | 47.2% |
| 5i7pA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.61 | 43.0 | 4.24e-01 | 79.1% | 83.3% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 42.0 | 3.27e-01 | 79.1% | 38.5% |
| 3kmhA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 47.0 | 3.05e-01 | 95.3% | 29.4% |
| 4iv9A03 | 1.10.405.40 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › | 0.54 | 42.0 | 3.01e-01 | 93.0% | 79.2% |
| 2cswA01 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.53 | 41.0 | 3.07e-01 | 93.0% | 54.0% |
| 2zzeA03 | 2.40.30.130 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.52 | 42.0 | 3.39e-01 | 97.7% | 85.7% |
| 2xn2A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 40.0 | 3.25e-01 | 95.3% | 92.7% |
| 1z2aA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 2.82e-01 | 95.3% | 87.8% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4999902 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.94 | 84.0 | 5.63e-01 | 100.0% | 29.0% |
| 4971412 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.92 | 82.0 | 5.25e-01 | 100.0% | 23.3% |
| 4970868 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.91 | 82.0 | 5.69e-01 | 100.0% | 33.6% |
| 4944478 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.91 | 84.0 | 5.89e-01 | 100.0% | 35.8% |
| 4342207 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.91 | 79.0 | 5.34e-01 | 100.0% | 28.0% |
| 4983458 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.91 | 80.0 | 5.23e-01 | 100.0% | 25.5% |
| 4993128 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.90 | 80.0 | 5.27e-01 | 100.0% | 26.2% |
| 4999893 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.89 | 76.0 | 5.52e-01 | 97.7% | 36.0% |
| 4993853 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.89 | 78.0 | 5.15e-01 | 100.0% | 25.5% |
| 1291738 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.88 | 78.0 | 5.72e-01 | 100.0% | 41.8% |
| 182766 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.88 | 76.0 | 4.91e-01 | 100.0% | 22.7% |
| 4971400 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.88 | 77.0 | 4.54e-01 | 100.0% | 14.2% |
| 4975971 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.87 | 75.0 | 5.26e-01 | 100.0% | 32.3% |
| 4999896 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.86 | 75.0 | 5.30e-01 | 100.0% | 33.6% |
| 4943244 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.85 | 75.0 | 4.92e-01 | 100.0% | 24.7% |
| 2524072 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.85 | 73.0 | 4.82e-01 | 100.0% | 24.7% |
| 4948016 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.83 | 71.0 | 4.87e-01 | 100.0% | 28.0% |
| 4997604 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 71.0 | 4.71e-01 | 100.0% | 24.7% |
| 4993480 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 71.0 | 4.75e-01 | 100.0% | 26.2% |
| 5065747 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.69 | 50.0 | 3.97e-01 | 79.1% | 57.8% |
| 3602123 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.63 | 50.0 | 4.23e-01 | 93.0% | 70.5% |
| 4945827 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.63 | 50.0 | 4.05e-01 | 93.0% | 70.0% |
| 3623941 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.59 | 43.0 | 4.34e-01 | 83.7% | 97.8% |
| 4190768 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.55 | 39.0 | 2.51e-01 | 79.1% | 62.4% |
| 3932485 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.53 | 43.0 | 3.31e-01 | 97.7% | 90.4% |
D3
medium
residues 31-118
Domain cluster:
rep: KU160494.1__ALY07084.1__VmeM32_00095__00088__D8-66
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00136.27 best | DNA_pol_B | 41.3 | 1.30e-10 | 95.5% | 15.0% |