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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00343

Bact-Vir

GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00343

Identity

Kingdom:
phage

Quality

92.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-121
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.86 73.0 5.63e-01 99.2% 44.2%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.83 71.0 5.52e-01 100.0% 44.7%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 71.0 7.21e-01 100.0% 92.4%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 71.0 7.21e-01 100.0% 93.3%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.81 73.0 5.65e-01 100.0% 46.9%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 69.0 5.78e-01 100.0% 56.0%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 71.0 7.10e-01 98.3% 92.7%
4trtA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 70.0 7.00e-01 100.0% 93.3%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 73.0 7.07e-01 100.0% 90.0%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 69.0 5.43e-01 100.0% 47.5%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 68.0 5.29e-01 99.2% 45.7%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 71.0 5.47e-01 100.0% 46.3%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 69.0 5.33e-01 100.0% 45.0%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 70.0 5.40e-01 100.0% 46.6%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 70.0 6.91e-01 100.0% 92.1%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 66.0 5.22e-01 99.2% 46.3%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.76 70.0 5.33e-01 100.0% 48.3%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 66.0 6.50e-01 100.0% 86.7%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 64.0 6.40e-01 100.0% 88.5%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 68.0 5.23e-01 100.0% 45.5%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 64.0 6.42e-01 100.0% 88.6%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 63.0 6.49e-01 99.2% 93.8%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 64.0 5.19e-01 99.2% 50.2%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.74 62.0 6.41e-01 98.3% 94.7%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.73 62.0 6.27e-01 100.0% 90.8%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.73 61.0 6.10e-01 100.0% 87.1%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.72 66.0 6.48e-01 100.0% 93.0%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.72 65.0 5.76e-01 100.0% 93.7%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.71 64.0 6.26e-01 100.0% 90.8%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.70 58.0 4.68e-01 100.0% 46.9%
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.70 63.0 4.87e-01 100.0% 48.7%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.69 62.0 4.87e-01 100.0% 47.4%
6ap4B02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.69 64.0 6.03e-01 100.0% 87.2%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.68 60.0 4.57e-01 100.0% 47.0%
3hslX00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.67 61.0 4.60e-01 100.0% 47.4%
3q8dA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 35.0 4.11e-01 95.8% 96.1%
2iciA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 35.0 4.11e-01 94.2% 97.4%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 18.0 2.85e-01 97.5% 83.8%
2hboA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 39.0 3.86e-01 100.0% 70.7%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.53 45.0 3.48e-01 94.2% 95.6%
2knqA01 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.51 43.0 4.20e-01 91.7% 93.2%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.51 29.0 3.52e-01 76.7% 84.8%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 24.0 2.94e-01 89.2% 69.4%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3387590 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.87 73.0 7.44e-01 100.0% 90.4%
4939065 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.87 75.0 7.58e-01 100.0% 90.8%
4599875 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.86 74.0 7.44e-01 100.0% 90.0%
5059299 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.85 74.0 7.43e-01 100.0% 90.8%
4980359 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.85 73.0 7.39e-01 100.0% 90.8%
1871497 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.85 72.0 7.28e-01 100.0% 89.9%
4059128 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.83 71.0 7.16e-01 100.0% 90.8%
5990 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.83 71.0 7.10e-01 100.0% 89.3%
4936049 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.83 71.0 7.13e-01 100.0% 90.8%
5027066 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.82 73.0 7.21e-01 100.0% 90.4%
4983063 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.82 74.0 7.28e-01 100.0% 91.2%
5070586 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.82 73.0 7.25e-01 100.0% 91.2%
5037344 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.82 71.0 7.18e-01 99.2% 93.3%
4178829 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.81 72.0 7.08e-01 100.0% 89.6%
5039026 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.81 68.0 6.85e-01 100.0% 88.3%
4941928 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.81 71.0 7.18e-01 100.0% 93.3%
136536 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.81 69.0 6.91e-01 99.2% 89.3%
162047 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.81 71.0 7.01e-01 100.0% 89.0%
4302174 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.81 70.0 6.91e-01 100.0% 88.8%
4995027 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.80 69.0 6.84e-01 100.0% 88.0%
5056757 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.80 70.0 6.89e-01 100.0% 89.6%
4870150 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 72.0 6.98e-01 100.0% 87.3%
143269 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 69.0 6.79e-01 99.2% 88.8%
3743107 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.79 74.0 7.04e-01 100.0% 90.7%
4937819 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 69.0 6.89e-01 100.0% 90.4%
4057537 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 69.0 6.86e-01 100.0% 89.6%
5043506 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 69.0 6.87e-01 100.0% 89.6%
2392830 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 71.0 6.87e-01 100.0% 87.8%
5047575 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 70.0 6.94e-01 100.0% 91.2%
4998585 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 68.0 6.86e-01 100.0% 92.5%
4142781 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 70.0 6.93e-01 100.0% 91.2%
5044014 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 68.0 7.01e-01 100.0% 97.4%
4372908 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 67.0 6.62e-01 100.0% 87.2%
5078494 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.78 69.0 6.81e-01 100.0% 90.4%
4987602 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.78 69.0 6.80e-01 99.2% 90.4%
5037314 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 70.0 7.00e-01 100.0% 95.0%
1822927 227.1.1.2 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 71.0 6.33e-01 100.0% 71.8%
4992059 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 70.0 6.94e-01 100.0% 93.5%
5011281 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 69.0 6.85e-01 100.0% 91.2%
4943404 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 70.0 6.87e-01 100.0% 90.0%
5029787 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 67.0 6.76e-01 100.0% 92.5%
2442100 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.78 71.0 6.82e-01 100.0% 86.8%
4976500 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 70.0 6.83e-01 100.0% 89.8%
5033948 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 68.0 6.66e-01 100.0% 86.9%
4934002 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.77 68.0 6.68e-01 100.0% 87.7%
5028024 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.77 68.0 6.68e-01 100.0% 87.7%
4941929 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.77 68.0 6.73e-01 100.0% 89.1%
4096140 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 68.0 6.77e-01 99.2% 91.2%
3602548 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 67.0 6.68e-01 100.0% 90.4%
5052550 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 70.0 6.91e-01 100.0% 93.6%
4948360 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.77 67.0 6.55e-01 99.2% 86.8%
4934001 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 70.0 6.98e-01 100.0% 95.2%
3722114 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.76 71.0 6.47e-01 100.0% 91.6%
3397928 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.76 70.0 6.90e-01 99.2% 94.4%
5043507 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 69.0 6.95e-01 100.0% 97.5%
2588759 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 67.0 6.76e-01 100.0% 94.2%
5027067 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 69.0 6.97e-01 100.0% 97.5%
4998584 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 71.0 6.79e-01 100.0% 90.4%
3785352 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.76 70.0 6.27e-01 100.0% 88.5%
4212381 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 69.0 6.63e-01 100.0% 86.7%
4026073 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 70.0 6.96e-01 100.0% 97.6%
4660283 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 68.0 6.79e-01 100.0% 93.6%
5023031 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 67.0 6.65e-01 100.0% 92.0%
3351110 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 70.0 7.03e-01 100.0% 99.2%
4983064 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 68.0 6.75e-01 100.0% 93.5%
3534499 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.76 70.0 6.54e-01 100.0% 92.4%
4943405 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 67.0 6.69e-01 100.0% 92.8%
4038410 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.76 69.0 6.55e-01 99.2% 92.1%
3804177 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.75 69.0 6.51e-01 100.0% 93.8%
4936050 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.75 67.0 6.66e-01 100.0% 92.0%
309454 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.75 66.0 6.43e-01 100.0% 86.4%
5991 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.75 65.0 6.52e-01 100.0% 91.8%
4929645 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.75 67.0 6.62e-01 100.0% 92.0%
3623607 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.75 69.0 6.56e-01 100.0% 90.7%
3798354 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.75 69.0 6.65e-01 100.0% 94.1%
4456195 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.75 66.0 6.68e-01 100.0% 95.0%
3597091 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.75 66.0 6.54e-01 100.0% 91.1%
4608521 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.75 69.0 5.78e-01 100.0% 75.5%
3478161 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.75 69.0 6.64e-01 100.0% 91.9%
143267 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.75 67.0 6.60e-01 100.0% 91.3%
5000467 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.75 69.0 6.64e-01 100.0% 94.1%
4172290 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.75 67.0 6.50e-01 100.0% 89.2%
4991675 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.75 66.0 6.55e-01 100.0% 92.0%
4956740 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.74 67.0 6.64e-01 100.0% 93.6%
3230925 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.74 67.0 6.57e-01 100.0% 90.8%
3939755 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.74 68.0 6.31e-01 100.0% 85.1%
4517015 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.74 65.0 6.46e-01 100.0% 91.9%
3251045 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.74 66.0 6.07e-01 100.0% 76.0%
3997015 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.74 66.0 6.47e-01 100.0% 90.0%
3292092 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.74 68.0 6.56e-01 100.0% 91.8%
5037345 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.73 67.0 6.51e-01 100.0% 90.2%
4043935 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.73 66.0 6.50e-01 100.0% 91.5%
3256904 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.73 65.0 6.43e-01 100.0% 92.8%
5074320 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.73 66.0 6.41e-01 100.0% 90.8%
3624708 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.73 66.0 6.32e-01 100.0% 87.4%
1290662 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.72 67.0 6.29e-01 100.0% 83.9%
4030418 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.72 67.0 6.35e-01 100.0% 92.1%
138072 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.72 66.0 6.45e-01 100.0% 90.8%
4026069 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.70 64.0 6.16e-01 100.0% 89.6%
3702817 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.70 64.0 6.20e-01 100.0% 91.0%
D2 high residues 141-245
PDB
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.84 79.0 7.30e-01 100.0% 96.9%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.83 78.0 5.70e-01 100.0% 48.1%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.83 78.0 5.75e-01 100.0% 47.3%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.83 73.0 5.33e-01 93.3% 46.7%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.83 77.0 5.79e-01 100.0% 78.6%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.82 77.0 5.72e-01 100.0% 50.0%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.82 77.0 5.80e-01 100.0% 49.1%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 75.0 7.21e-01 99.0% 95.8%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.81 76.0 5.65e-01 100.0% 48.6%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.81 72.0 5.31e-01 94.3% 46.6%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 76.0 6.06e-01 100.0% 58.5%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.81 75.0 5.70e-01 98.1% 79.6%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.81 75.0 5.60e-01 100.0% 48.4%
1jqlA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 75.0 7.16e-01 100.0% 96.6%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 75.0 7.15e-01 100.0% 96.6%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.81 72.0 5.29e-01 95.2% 46.3%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 70.0 6.55e-01 92.4% 92.7%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 71.0 5.90e-01 94.3% 63.4%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.80 73.0 6.13e-01 100.0% 98.9%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 69.0 6.75e-01 92.4% 94.7%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.79 74.0 5.51e-01 100.0% 78.9%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 71.0 6.72e-01 95.2% 88.5%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 73.0 6.84e-01 100.0% 96.0%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 68.0 6.47e-01 93.3% 88.6%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 71.0 5.35e-01 100.0% 48.2%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 69.0 6.52e-01 95.2% 87.9%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 72.0 6.73e-01 100.0% 89.8%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 71.0 5.22e-01 100.0% 44.2%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 70.0 5.02e-01 100.0% 47.0%
3hslX00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 71.0 5.07e-01 100.0% 50.5%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 69.0 6.39e-01 100.0% 93.8%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 35.0 4.39e-01 96.2% 100.0%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.56 23.0 2.88e-01 70.5% 60.0%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 31.0 2.82e-01 100.0% 40.1%
1dzuP00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.54 39.0 3.15e-01 75.2% 68.9%
2ej8B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 35.0 3.28e-01 97.1% 55.0%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 37.0 3.10e-01 75.2% 50.8%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 37.0 3.04e-01 75.2% 78.5%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3351103 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.85 80.0 7.26e-01 100.0% 90.4%
3738030 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.85 79.0 7.21e-01 100.0% 94.8%
5039027 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.84 77.0 7.30e-01 97.1% 95.8%
3782606 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.84 78.0 6.93e-01 100.0% 91.0%
4939066 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.84 78.0 7.24e-01 100.0% 94.6%
5027067 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.84 76.0 7.26e-01 97.1% 99.2%
4426056 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.83 78.0 6.72e-01 100.0% 87.1%
1290662 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 78.0 6.92e-01 100.0% 87.4%
5037345 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 77.0 7.09e-01 100.0% 94.0%
3238130 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.83 77.0 6.84e-01 100.0% 89.7%
4500973 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 77.0 7.29e-01 100.0% 95.1%
4030418 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 77.0 6.95e-01 100.0% 97.1%
4936050 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 77.0 7.21e-01 100.0% 96.8%
4976500 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 77.0 7.17e-01 100.0% 93.8%
3623607 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.82 76.0 6.86e-01 99.0% 92.9%
3798354 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.82 76.0 6.95e-01 99.0% 97.0%
2392830 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.82 76.0 6.99e-01 99.0% 90.8%
4941929 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 77.0 7.14e-01 100.0% 93.8%
2588759 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 76.0 7.25e-01 99.0% 97.5%
4991675 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 77.0 7.19e-01 100.0% 96.8%
5028024 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 76.0 7.06e-01 100.0% 92.3%
3292092 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 76.0 6.96e-01 100.0% 95.5%
3251045 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 76.0 6.60e-01 100.0% 80.5%
4026069 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 76.0 6.95e-01 100.0% 93.3%
4517015 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 76.0 7.14e-01 100.0% 96.8%
5033948 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 76.0 7.01e-01 100.0% 91.5%
167574 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 76.0 7.00e-01 100.0% 90.8%
5052550 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.81 73.0 6.83e-01 95.2% 94.4%
4934002 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 76.0 7.00e-01 100.0% 92.3%
4660283 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 76.0 7.12e-01 100.0% 96.8%
4372908 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.81 75.0 7.09e-01 100.0% 92.0%
2442100 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.81 74.0 6.70e-01 97.1% 88.2%
4956740 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 75.0 7.08e-01 100.0% 96.8%
3015239 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.81 75.0 7.22e-01 100.0% 94.1%
4027851 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.81 72.0 6.38e-01 95.2% 92.4%
4941928 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.81 72.0 6.89e-01 95.2% 94.2%
3520418 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.81 71.0 6.26e-01 94.3% 90.7%
3788095 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.81 72.0 6.57e-01 95.2% 90.4%
3939755 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.81 74.0 6.49e-01 98.1% 87.2%
5991 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 75.0 7.11e-01 100.0% 95.9%
3256386 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.80 74.0 6.78e-01 100.0% 95.6%
3480669 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.80 71.0 6.37e-01 95.2% 91.6%
3602548 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.80 71.0 6.65e-01 94.3% 90.4%
3346536 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.80 72.0 6.41e-01 97.1% 87.6%
3193266 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.80 71.0 6.29e-01 95.2% 91.0%
3936914 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 74.0 6.84e-01 100.0% 96.2%
5056757 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 72.0 6.72e-01 96.2% 91.2%
3251868 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.79 70.0 6.34e-01 95.2% 91.4%
3715457 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.79 72.0 6.36e-01 100.0% 96.7%
3719304 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.79 73.0 6.67e-01 100.0% 91.0%
4633559 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.79 73.0 6.78e-01 100.0% 93.8%
4939065 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 69.0 6.63e-01 94.3% 90.8%
2987540 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.79 70.0 6.48e-01 95.2% 83.8%
3789625 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 72.0 6.61e-01 100.0% 98.5%
144176 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.78 73.0 6.84e-01 100.0% 92.7%
3728061 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.78 71.0 6.51e-01 98.1% 90.2%
3210421 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.78 70.0 6.10e-01 97.1% 89.0%
5039219 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 72.0 6.77e-01 100.0% 95.2%
3743202 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.78 68.0 6.51e-01 94.3% 95.8%
4625643 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.78 70.0 6.70e-01 96.2% 91.6%
1924008 227.1.1.10 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP 0.77 71.0 6.63e-01 100.0% 93.0%
3988707 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.77 33.0 4.47e-01 99.0% 76.4%
1013950 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.77 71.0 6.76e-01 100.0% 95.9%
2878142 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.76 70.0 6.65e-01 100.0% 94.3%
3227023 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 33.0 2.67e-01 96.2% 29.7%
4607576 4.1.1.370 beta barrels › SH3 › SH3 › SH3 › PF28261 0.59 33.0 3.91e-01 99.0% 81.4%
4030967 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.53 41.0 4.03e-01 82.9% 86.7%