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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00361

Bact-Vir

GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00361

Identity

Kingdom:
phage

Quality

87.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-204
PDB
D2 high residues 339-417
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5owcA00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.56 46.0 4.02e-01 91.1% 77.9%
4iggB06 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 45.0 3.35e-01 97.5% 68.4%
4xaaA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.51 43.0 3.17e-01 93.7% 84.2%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 44.0 2.99e-01 97.5% 59.6%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5007461 5065.1.1.3 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.59 47.0 3.12e-01 86.1% 86.2%
1695454 3517.1.1.1 a+b complex topology › Polymerase acidic protein › Polymerase acidic protein › Polymerase acidic protein › Flu_PA 0.52 39.0 2.52e-01 86.1% 60.7%
3744034 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 41.0 2.68e-01 87.3% 34.3%
4998161 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 44.0 3.57e-01 98.7% 100.0%
D3 medium residues 34-56_214-242_304-338
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 46.0 4.33e-01 70.1% 78.6%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.61 55.0 4.98e-01 100.0% 81.4%
5ux1D00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 52.0 4.12e-01 100.0% 70.1%
6e1kA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 46.0 4.21e-01 80.5% 92.9%
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.59 46.0 4.78e-01 88.5% 87.8%
3mvpA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 50.0 4.13e-01 90.8% 71.1%
3op0A01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.58 50.0 4.37e-01 97.7% 86.8%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 46.0 4.53e-01 95.4% 83.2%
2oezA02 1.10.3900.10 Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like 0.56 48.0 4.03e-01 100.0% 79.1%
2wbiB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 47.0 3.94e-01 98.9% 60.1%
1txgA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 46.0 3.84e-01 95.4% 91.0%
2hz8A00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.54 43.0 3.97e-01 92.0% 67.0%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.54 37.0 3.57e-01 71.3% 98.0%
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.53 41.0 3.80e-01 81.6% 71.6%
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.53 39.0 4.08e-01 92.0% 87.2%
3vkgA02 1.20.140.100 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain 0.53 46.0 3.88e-01 97.7% 95.2%
3dytA02 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.52 45.0 3.56e-01 97.7% 89.5%
6todA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 45.0 3.18e-01 100.0% 72.1%
5ux2B01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 45.0 3.47e-01 100.0% 86.4%
2wsiA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 44.0 3.18e-01 100.0% 85.6%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082904 3594.1.1.0 alpha bundles › Oncogenic effector CagA domain III › Oncogenic effector CagA domain III › Oncogenic effector CagA domain III 0.69 47.0 4.26e-01 98.9% 53.0%
4975294 601.28.1.0 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.68 51.0 5.07e-01 95.4% 76.7%
4025258 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 41.0 4.10e-01 72.4% 64.4%
3938230 5045.1.1.3 alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › V_ATPase_I 0.63 55.0 3.91e-01 98.9% 65.2%
4789617 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.61 41.0 4.08e-01 70.1% 94.7%
5036461 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.60 48.0 4.77e-01 96.6% 84.4%
3255530 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.59 47.0 4.46e-01 100.0% 70.9%
4935665 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.59 47.0 4.88e-01 96.6% 95.0%
5048247 632.1.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.59 48.0 4.67e-01 97.7% 80.0%
4468935 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.59 51.0 4.48e-01 97.7% 65.4%
4362754 5086.1.1.86 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YBHG 0.58 40.0 3.63e-01 71.3% 60.0%
3923707 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.58 51.0 4.99e-01 97.7% 94.7%
2983210 6004.1.1.2 extended segments › FATC domain › FATC domain › FATC domain › ETC_C1_NDUFA5 0.58 46.0 4.21e-01 96.6% 64.4%
3589029 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.58 49.0 4.53e-01 95.4% 92.2%
3717920 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.57 50.0 4.17e-01 97.7% 56.1%
3836689 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.57 47.0 3.97e-01 96.6% 52.7%
3823576 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.57 47.0 3.98e-01 96.6% 53.7%
3199926 611.2.1.0 alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) 0.56 47.0 4.23e-01 97.7% 66.4%
3215510 601.16.1.0 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase 0.56 47.0 4.06e-01 95.4% 58.6%
3581069 601.1.1.37 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Frag1 0.55 46.0 3.76e-01 92.0% 50.3%
3211383 632.15.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.55 46.0 4.41e-01 97.7% 82.0%
3185570 3755.4.1.3 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Helo_like_N 0.55 47.0 3.80e-01 97.7% 76.0%
3573589 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.54 46.0 4.47e-01 97.7% 93.0%
4996751 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.53 46.0 4.39e-01 100.0% 81.9%
3600225 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.53 44.0 3.44e-01 92.0% 61.0%
3597275 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.53 45.0 4.16e-01 95.4% 76.5%
3697861 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 46.0 3.50e-01 100.0% 90.5%
3782787 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.53 39.0 4.19e-01 90.8% 92.0%
3713912 633.21.1.22 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › COPI_assoc 0.52 45.0 4.05e-01 97.7% 73.3%
3630322 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 45.0 2.82e-01 100.0% 50.5%
3628782 4198.1.1.0 alpha arrays › TerB-like › TerB-like › TerB-like 0.51 40.0 3.48e-01 87.4% 74.3%
3380671 5050.1.1.8 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › FPN1 0.51 39.0 3.21e-01 82.8% 63.1%
3754384 108.1.1.35 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_13 0.50 40.0 3.86e-01 89.7% 83.8%
D4 medium residues 243-303
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zvkA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.79 64.0 4.90e-01 98.4% 40.3%
2w43A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.74 51.0 5.29e-01 72.1% 84.2%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.74 51.0 4.78e-01 72.1% 68.0%
3umcD02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.70 51.0 4.77e-01 78.7% 65.4%
7ml0M01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 57.0 5.25e-01 100.0% 82.9%
4rflA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.65 55.0 3.93e-01 100.0% 86.4%
2q14B01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.65 56.0 3.82e-01 100.0% 38.2%
2c9oB03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.65 54.0 4.83e-01 90.2% 86.7%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.65e-01 95.1% 81.8%
3uk6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 55.0 4.91e-01 95.1% 89.2%
1khyD00 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.63 47.0 3.78e-01 86.9% 46.0%
6azyA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.62 49.0 3.91e-01 88.5% 45.0%
6w6jD01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.62 49.0 3.87e-01 88.5% 47.3%
7tfmA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.59 49.0 3.85e-01 93.4% 44.8%
3ajfA00 1.20.1440.190 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tenuivirus movement protein 0.57 45.0 3.93e-01 85.2% 85.9%
5oklA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 48.0 4.17e-01 100.0% 89.1%
1bhaA00 1.10.287.170 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 37.0 3.62e-01 72.1% 79.1%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.53 46.0 4.23e-01 98.4% 81.5%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.51 45.0 4.06e-01 100.0% 78.8%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075508 2006.1.4.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.82 69.0 5.32e-01 98.4% 43.1%
3273271 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.80 56.0 4.00e-01 73.8% 32.4%
2776079 3787.1.1.0 alpha bundles › HAD superfamily helical bundle insertion domain 0.76 53.0 5.43e-01 73.8% 82.5%
3788346 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 62.0 3.58e-01 100.0% 10.2%
4975399 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.72 63.0 5.30e-01 100.0% 78.1%
4341780 4957.1.1.0 a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.68 56.0 5.47e-01 93.4% 83.1%
3622768 101.1.10.13 alpha arrays › HTH › HTH › Cyclin-like › DUF3452 0.68 57.0 4.76e-01 100.0% 70.4%
5037154 4953.1.1.39 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › LPG_synthase_TM 0.67 57.0 5.23e-01 100.0% 92.9%
3962576 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.67 50.0 4.56e-01 82.0% 67.5%
3507479 148.1.3.264 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PHO4 0.66 50.0 4.31e-01 83.6% 60.0%
5059610 148.1.3.403 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RNA_pol_Rpb1_5 0.66 61.0 4.42e-01 100.0% 45.8%
4024241 4979.2.1.1 alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD 0.66 56.0 5.16e-01 100.0% 74.4%
4890990 2004.1.1.181 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_7 0.63 55.0 3.99e-01 100.0% 55.3%
3924465 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 44.0 3.57e-01 77.0% 80.0%
3699966 148.1.3.10 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_6 0.61 50.0 4.20e-01 95.1% 59.1%
3714186 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.60 48.0 4.07e-01 100.0% 50.4%
4032062 162.1.1.0 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.59 52.0 4.30e-01 100.0% 72.7%
3969254 191.1.1.9 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR 0.59 52.0 3.95e-01 100.0% 57.2%
3928496 143.1.1.0 alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain 0.57 44.0 4.46e-01 85.2% 98.3%