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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00374

Bact-Vir

GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00374

Identity

Kingdom:
phage

Quality

80.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 101-212_406-435
PDB
D2 high residues 220-262
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.88 71.0 4.82e-01 88.4% 26.8%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 69.0 6.04e-01 88.4% 59.4%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 67.0 5.40e-01 86.0% 47.5%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 67.0 5.93e-01 88.4% 60.3%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 67.0 6.22e-01 88.4% 77.8%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 66.0 4.96e-01 88.4% 36.2%
1ku3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 66.0 5.89e-01 88.4% 68.9%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 68.0 6.25e-01 93.0% 80.4%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.81 64.0 3.92e-01 88.4% 14.8%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 67.0 6.06e-01 93.0% 75.9%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 63.0 5.67e-01 88.4% 62.3%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 62.0 5.49e-01 88.4% 58.5%
1lvaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 67.0 6.03e-01 100.0% 83.9%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 62.0 6.18e-01 88.4% 84.1%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 67.0 4.75e-01 100.0% 39.1%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 60.0 5.43e-01 88.4% 63.3%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.77 59.0 4.71e-01 83.7% 43.5%
2xi8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 55.0 4.76e-01 81.4% 51.5%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 60.0 5.26e-01 100.0% 83.3%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 56.0 4.95e-01 83.7% 58.7%
3f51C00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 54.0 4.28e-01 83.7% 40.0%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 60.0 5.22e-01 100.0% 61.4%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 60.0 4.91e-01 100.0% 65.9%
2p5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 57.0 5.42e-01 93.0% 86.5%
3i71B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 4.78e-01 88.4% 74.1%
2keyA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.56 45.0 3.50e-01 100.0% 60.7%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027604 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.92 82.0 7.32e-01 100.0% 75.0%
4938253 101.1.1.9 alpha arrays › HTH › HTH › Three-helical HTH › HTH_3 0.90 75.0 7.76e-01 90.7% 100.0%
3972638 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.89 71.0 6.17e-01 88.4% 58.5%
5058447 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 79.0 7.26e-01 100.0% 78.2%
3284461 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 70.0 4.27e-01 88.4% 15.2%
3603236 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 75.0 7.74e-01 93.0% 100.0%
4966195 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.87 70.0 5.89e-01 88.4% 54.3%
3890615 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.86 70.0 6.69e-01 93.0% 78.0%
3946049 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.86 68.0 6.55e-01 88.4% 84.0%
3972713 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.85 68.0 5.23e-01 88.4% 40.0%
5027602 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 73.0 6.73e-01 97.7% 80.0%
3860590 101.1.1.101 alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 0.84 74.0 7.07e-01 100.0% 94.0%
3281471 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.84 67.0 5.42e-01 88.4% 47.5%
3967675 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.83 66.0 6.32e-01 88.4% 76.0%
4952159 101.1.1.9 alpha arrays › HTH › HTH › Three-helical HTH › HTH_3 0.83 64.0 5.06e-01 86.0% 41.1%
3908306 101.1.1.101 alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 0.83 72.0 6.53e-01 100.0% 78.3%
2330636 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 66.0 6.17e-01 88.4% 71.7%
4318089 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.82 71.0 6.40e-01 100.0% 75.0%
3795916 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 63.0 6.26e-01 86.0% 82.2%
4541333 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 65.0 6.20e-01 88.4% 82.0%
4530655 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 64.0 4.89e-01 88.4% 38.0%
5059633 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.81 69.0 6.46e-01 100.0% 96.4%
3279913 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 61.0 3.98e-01 86.0% 19.5%
3947091 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.80 66.0 5.96e-01 93.0% 73.3%
4520564 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.80 69.0 5.69e-01 100.0% 60.0%
4244028 101.1.1.107 alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.79 62.0 5.62e-01 88.4% 63.3%
3929142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 68.0 6.16e-01 100.0% 73.3%
5025805 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 64.0 6.00e-01 95.3% 72.7%
3581338 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 66.0 6.02e-01 100.0% 88.3%
4205790 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 59.0 4.92e-01 88.4% 47.5%
3512259 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.76 58.0 4.44e-01 86.0% 36.2%
4454772 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.76 58.0 5.12e-01 88.4% 56.9%
3964284 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 63.0 5.75e-01 100.0% 76.7%
4987329 101.1.2.881 alpha arrays › HTH › HTH › winged helix domain › UPF0175 0.74 63.0 5.13e-01 100.0% 50.6%
5062514 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.73 58.0 5.81e-01 97.7% 91.1%
4993165 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.73 60.0 4.78e-01 97.7% 44.2%
5052578 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.73 58.0 5.92e-01 100.0% 100.0%
4966880 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.72 59.0 4.74e-01 100.0% 45.3%
3985435 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 55.0 5.62e-01 93.0% 100.0%
4090141 101.1.1.494 alpha arrays › HTH › HTH › Three-helical HTH › HTH_29 0.70 53.0 4.89e-01 88.4% 63.3%
D3 medium residues 1-11_440-523
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02511.21 best Thy1 28.9 1.20e-06 94.7% 31.9%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kq4A00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.62 57.0 4.29e-01 96.8% 69.0%
3ah5B00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.60 53.0 4.06e-01 94.7% 76.8%
4rv5A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 48.0 3.68e-01 93.7% 96.2%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1716752 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.65 61.0 4.50e-01 100.0% 72.1%
5072453 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.64 52.0 5.52e-01 94.7% 98.8%
4982008 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.64 58.0 4.46e-01 96.8% 71.0%
143031 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.60 53.0 4.05e-01 94.7% 76.4%
4881188 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.54 48.0 4.06e-01 94.7% 75.2%
4972308 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.52 42.0 3.23e-01 86.3% 85.2%
3844936 101.1.1.273 alpha arrays › HTH › HTH › Three-helical HTH › PF26094 0.51 32.0 3.58e-01 74.7% 80.0%
3369032 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.51 42.0 3.55e-01 90.5% 55.0%
D4 medium residues 12-75
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ac1A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 52.0 3.73e-01 98.4% 39.4%
3l9vC00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 50.0 3.69e-01 98.4% 40.9%
2d2mD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 50.0 3.90e-01 100.0% 66.9%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 35.0 3.60e-01 87.5% 68.9%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 47.0 3.73e-01 100.0% 70.7%
2oifB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 47.0 3.66e-01 100.0% 68.2%
4ol8B03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.54 43.0 3.96e-01 95.3% 83.3%
1a00B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 46.0 3.63e-01 100.0% 69.2%
3i01A01 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 38.0 2.90e-01 81.2% 81.4%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.39e-01 87.5% 87.8%
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 43.0 3.41e-01 96.9% 67.4%
1x9fA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 43.0 3.35e-01 95.3% 66.7%
2js9A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.51 36.0 3.43e-01 78.1% 61.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3997392 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.55 49.0 3.56e-01 100.0% 57.8%
4030787 605.1.1.303 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Terminase_4 0.53 37.0 3.27e-01 81.2% 48.0%
5057364 2007.1.3.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 0.52 43.0 3.62e-01 96.9% 94.2%
D5 medium residues 76-94_524-572
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02511.21 best Thy1 31.6 1.90e-07 63.2% 20.9%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kq4A00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.90 84.0 5.78e-01 100.0% 73.9%
2af6A01 3.30.70.3180 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.90 84.0 6.56e-01 100.0% 88.5%
2cfaA01 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.88 80.0 6.11e-01 98.5% 60.4%
3ah5B00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.85 77.0 5.36e-01 98.5% 73.9%
1iygA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 49.0 3.97e-01 77.9% 48.9%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 31.0 3.37e-01 82.4% 50.0%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 31.0 3.40e-01 83.8% 56.4%
1gwcA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 45.0 3.72e-01 89.7% 79.4%
1hekA00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.56 46.0 3.94e-01 95.6% 89.7%
3wicA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 40.0 2.92e-01 77.9% 93.4%
2nutB01 1.20.120.730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain 0.54 42.0 3.39e-01 89.7% 82.4%
6zepA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 39.0 2.55e-01 100.0% 16.2%
2dsjA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.53 38.0 3.87e-01 77.9% 97.0%
1u08A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 35.0 2.79e-01 100.0% 33.1%
4o5fA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 42.0 3.55e-01 94.1% 93.7%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4992830 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.93 87.0 5.82e-01 100.0% 72.9%
5001652 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.92 85.0 5.54e-01 100.0% 64.6%
4930760 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.91 85.0 5.52e-01 100.0% 63.5%
4982008 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.91 84.0 5.85e-01 100.0% 72.5%
5046119 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.91 84.0 5.79e-01 100.0% 68.3%
4246528 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.90 84.0 5.55e-01 100.0% 73.0%
5077404 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.90 84.0 5.52e-01 100.0% 66.9%
4943595 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.90 83.0 5.62e-01 100.0% 70.2%
4134497 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.89 83.0 5.56e-01 100.0% 67.4%
5029299 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.89 82.0 5.65e-01 100.0% 65.7%
5024487 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.88 81.0 5.59e-01 100.0% 66.7%
1007250 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.88 81.0 5.61e-01 98.5% 71.1%
4102574 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.87 81.0 5.37e-01 100.0% 71.7%
5054516 842.1.1.0 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 0.86 75.0 5.38e-01 95.6% 80.0%
4988219 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.85 78.0 5.16e-01 100.0% 72.0%
4300356 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.85 76.0 5.32e-01 97.1% 73.0%
143031 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.85 78.0 5.39e-01 100.0% 74.0%
4933143 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.83 73.0 5.17e-01 98.5% 73.9%
3682647 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.73 52.0 2.88e-01 75.0% 7.8%
3371345 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 53.0 3.03e-01 79.4% 11.3%
4513021 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 52.0 4.00e-01 86.8% 41.2%
3443616 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 59.0 3.97e-01 98.5% 38.4%
3731364 3922.1.1.137 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › HisKA 0.65 39.0 4.03e-01 86.8% 63.1%
3213149 109.4.1.15 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS 0.63 55.0 4.27e-01 100.0% 67.1%
3632017 109.4.1.404 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fes1 0.63 55.0 3.86e-01 100.0% 43.1%
3640518 109.4.1.357 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vac14_Fig4_bd 0.62 55.0 3.41e-01 100.0% 25.1%
2117370 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 51.0 4.39e-01 94.1% 73.9%
3759449 109.4.1.894 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_CUL7_CUL9 0.62 54.0 4.01e-01 100.0% 52.4%
3276156 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 51.0 2.88e-01 97.1% 10.9%
3228092 3599.1.1.1 alpha superhelices › Mitochondrial malonyl-CoA decarboxylase helical domain › Mitochondrial malonyl-CoA decarboxylase helical domain › Mitochondrial malonyl-CoA decarboxylase helical domain › MCD_N 0.57 43.0 3.52e-01 82.4% 82.2%
3680998 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 47.0 3.11e-01 100.0% 89.3%
3824468 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.54 46.0 3.66e-01 98.5% 52.4%
3257298 4193.1.1.1 alpha arrays › RUN domain › RUN domain › RUN domain › RUN 0.52 37.0 2.74e-01 76.5% 94.0%
D6 medium residues 337-405
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.77 65.0 6.12e-01 92.8% 92.8%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.70 58.0 4.37e-01 89.9% 50.6%
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.70 58.0 4.58e-01 91.3% 72.5%
2y43A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 34.0 3.16e-01 71.0% 43.2%
4wz0A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 42.0 3.68e-01 84.1% 56.0%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4981807 378.1.1.9 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.84 73.0 5.53e-01 94.2% 63.2%
5049537 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.81 63.0 5.61e-01 82.6% 66.0%
5080086 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.80 64.0 6.12e-01 85.5% 85.0%
3278018 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.79 56.0 6.18e-01 73.9% 100.0%
185780 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.78 66.0 5.89e-01 92.8% 79.4%
4974548 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.76 58.0 5.65e-01 81.2% 93.4%
4949181 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.76 66.0 6.45e-01 92.8% 98.7%
3586841 378.1.1.7 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 0.76 59.0 4.92e-01 82.6% 63.5%
5039655 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.76 64.0 6.12e-01 91.3% 98.8%
5082962 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.76 65.0 5.55e-01 94.2% 66.4%
3914801 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.75 53.0 4.31e-01 73.9% 78.4%
4959590 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.75 65.0 6.04e-01 94.2% 88.2%
3952776 377.1.1.88 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.75 60.0 6.16e-01 87.0% 100.0%
3952384 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.75 64.0 5.75e-01 94.2% 93.7%
2449258 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.74 60.0 4.49e-01 87.0% 46.3%
2628026 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.74 62.0 4.39e-01 91.3% 40.6%
3266965 378.1.2.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › HNH_3 0.74 53.0 5.54e-01 75.4% 98.5%
3952818 378.1.1.27 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.74 56.0 5.49e-01 81.2% 83.8%
5073918 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.73 63.0 5.62e-01 94.2% 90.5%
5070853 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.73 61.0 5.70e-01 92.8% 90.6%
3952923 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.72 62.0 5.49e-01 95.7% 88.0%
5053631 378.1.1.19 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.72 57.0 4.79e-01 84.1% 92.7%
4951302 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.72 52.0 5.35e-01 76.8% 92.3%
3695527 378.1.1.6 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon 0.72 56.0 4.57e-01 82.6% 66.7%
4989310 378.1.1.27 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.71 54.0 3.91e-01 81.2% 33.9%
8233 378.1.1.6 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon 0.70 58.0 4.37e-01 89.9% 50.6%
3277754 377.1.1.88 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.70 57.0 5.67e-01 87.0% 90.0%
89916 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.70 58.0 4.38e-01 89.9% 50.6%
3950953 377.1.1.78 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH_5 0.70 56.0 5.61e-01 87.0% 90.0%
4941657 377.1.1.88 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.68 54.0 5.30e-01 87.0% 100.0%
3539740 378.1.1.19 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.68 53.0 4.30e-01 82.6% 62.4%
4303143 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.68 50.0 4.69e-01 78.3% 63.5%
5019258 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.68 56.0 5.39e-01 92.8% 100.0%
3879791 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.67 57.0 3.93e-01 92.8% 32.0%
3561303 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.67 57.0 4.25e-01 92.8% 43.0%
3397473 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.67 57.0 4.69e-01 92.8% 59.2%
3489023 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.66 57.0 4.71e-01 94.2% 61.7%
3407704 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.58 39.0 4.14e-01 72.5% 80.0%
4113910 377.1.1.11 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C 0.53 38.0 2.92e-01 76.8% 32.9%
4623807 7587.1.1.1 a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Inositol_P 0.53 36.0 3.03e-01 71.0% 56.8%
385851 7587.1.1.1 a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Inositol_P 0.52 36.0 3.01e-01 72.5% 53.8%