Back to structures

GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00386

Bact-Vir

GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00386

Identity

Kingdom:
phage

Quality

45.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 499-573
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k8fA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.75 65.0 5.18e-01 100.0% 54.1%
2bm5B00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.74 64.0 4.92e-01 100.0% 47.8%
2yuhA01 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.73 64.0 4.97e-01 100.0% 47.1%
4kxfP04 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.67 57.0 3.66e-01 100.0% 28.0%
6o38A03 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.63 46.0 4.50e-01 78.7% 84.3%
4l9aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 50.0 3.52e-01 100.0% 80.2%
3gk7A01 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.57 44.0 3.47e-01 88.0% 46.7%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.56 48.0 4.62e-01 98.7% 98.9%
2rbgA00 3.40.50.11100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 41.0 3.55e-01 85.3% 72.6%
2piaA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.50 39.0 3.43e-01 88.0% 56.2%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3618317 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.82 75.0 5.27e-01 100.0% 36.4%
3877532 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.81 61.0 4.85e-01 100.0% 40.7%
3924009 207.4.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like 0.79 72.0 5.69e-01 100.0% 57.3%
3838073 207.14.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.79 69.0 6.26e-01 98.7% 71.0%
5020282 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.77 70.0 6.48e-01 100.0% 80.0%
4024460 208.7.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein 0.77 64.0 5.36e-01 100.0% 54.4%
3503258 207.4.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC 0.77 67.0 5.56e-01 96.0% 58.1%
4025419 207.4.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like 0.77 69.0 6.25e-01 100.0% 77.0%
4965634 207.14.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.76 68.0 5.69e-01 100.0% 60.0%
3596944 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.76 62.0 4.90e-01 100.0% 43.2%
3963707 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.76 63.0 6.23e-01 100.0% 86.3%
4012012 207.4.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like 0.75 67.0 6.10e-01 100.0% 86.0%
3517885 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.75 69.0 5.11e-01 100.0% 46.7%
4932011 207.14.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.75 67.0 5.81e-01 100.0% 65.2%
5077579 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.74 65.0 4.21e-01 100.0% 26.6%
3627892 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.74 66.0 4.84e-01 100.0% 41.5%
3741632 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.73 60.0 5.52e-01 100.0% 69.0%
3803729 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.72 51.0 5.38e-01 100.0% 86.2%
3870521 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.66 45.0 4.56e-01 70.7% 100.0%
3997590 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.63 46.0 5.00e-01 82.7% 100.0%
D2 high residues 1685-1788
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 33.8 4.50e-08 40.4% 69.0%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hqmD05 3.90.105.10 Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › Molybdopterin biosynthesis moea protein, domain 2 0.61 21.0 2.45e-01 74.0% 37.3%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 4.31e-01 82.7% 84.2%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.55 29.0 3.60e-01 73.1% 86.4%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 47.0 4.61e-01 93.3% 95.6%
3ckcA01 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 36.0 2.81e-01 96.2% 31.8%
3djlA02 6.10.250.600 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 24.0 3.09e-01 71.2% 74.1%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 49.0 4.33e-01 100.0% 75.0%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 39.0 3.90e-01 98.1% 75.2%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 47.0 4.30e-01 98.1% 79.7%
3u2rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 45.0 4.14e-01 95.2% 80.7%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 4.00e-01 84.6% 94.2%
4djhA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 43.0 3.19e-01 95.2% 56.8%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3563383 3240.1.1.2 alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA 0.88 83.0 7.13e-01 100.0% 71.0%
3944436 3240.1.1.1 alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.86 74.0 7.31e-01 96.2% 86.4%
3275547 3240.1.1.1 alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.85 58.0 5.75e-01 70.2% 79.1%
3718200 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.64 51.0 4.78e-01 98.1% 70.4%
4029803 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 45.0 4.22e-01 100.0% 61.5%
4410759 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 47.0 4.53e-01 97.1% 72.2%
3229643 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 43.0 4.11e-01 95.2% 62.5%
3394225 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 44.0 4.32e-01 100.0% 68.7%
3413217 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 46.0 4.44e-01 97.1% 71.3%
3787269 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.59 45.0 4.45e-01 97.1% 74.5%
5000789 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.59 43.0 4.32e-01 100.0% 76.2%
3637098 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.58 42.0 3.92e-01 100.0% 59.4%
4995244 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.58 45.0 4.49e-01 100.0% 78.2%
4178886 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 43.0 4.38e-01 95.2% 80.0%
4181293 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.58 43.0 4.29e-01 98.1% 74.5%
3236563 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.57 42.0 4.01e-01 100.0% 64.0%
3306699 101.1.2.517 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.56 49.0 3.36e-01 98.1% 89.2%
4985469 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 50.0 4.59e-01 98.1% 79.9%
3485296 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.56 41.0 4.18e-01 96.2% 77.1%
4973468 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 49.0 4.42e-01 98.1% 76.4%
3506312 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 49.0 4.50e-01 98.1% 80.0%
4984658 2003.4.1.1 a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.54 30.0 2.64e-01 79.8% 31.8%
3896368 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 49.0 4.32e-01 98.1% 72.3%
3614646 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 49.0 4.26e-01 98.1% 73.5%
5008906 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 48.0 4.33e-01 98.1% 73.8%
5079691 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 48.0 4.43e-01 98.1% 79.3%
3690513 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 44.0 4.04e-01 100.0% 68.4%
3628456 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 43.0 4.01e-01 95.2% 70.3%
5048161 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 48.0 4.32e-01 98.1% 76.4%
4938398 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 48.0 4.28e-01 98.1% 73.8%
4951472 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 48.0 4.27e-01 100.0% 87.2%
3710532 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 41.0 4.10e-01 97.1% 81.9%
4494181 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 48.0 4.27e-01 98.1% 73.8%
5036589 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 47.0 4.34e-01 98.1% 79.3%
4971920 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 46.0 4.34e-01 95.2% 82.4%
5022380 3755.3.1.632 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Prefoldin 0.53 48.0 4.33e-01 100.0% 93.6%
4990636 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 47.0 4.36e-01 97.1% 78.5%
4532543 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 47.0 4.24e-01 98.1% 76.4%
4626792 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 48.0 4.27e-01 100.0% 75.9%
4458171 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 47.0 4.39e-01 98.1% 80.8%
5038348 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 46.0 4.21e-01 98.1% 85.7%
3575976 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 46.0 4.16e-01 98.1% 76.6%
5027984 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 43.0 4.14e-01 91.3% 75.8%
4936526 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 47.0 4.24e-01 98.1% 79.7%
4661346 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 46.0 4.16e-01 98.1% 73.8%
4953135 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 47.0 4.23e-01 100.0% 89.0%
4941487 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 45.0 4.27e-01 100.0% 80.0%
4191334 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 46.0 4.25e-01 97.1% 76.9%
4993906 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 46.0 4.16e-01 98.1% 76.4%
4945806 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.51 44.0 4.20e-01 91.3% 83.3%
4303742 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 44.0 4.20e-01 100.0% 80.0%
4929746 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 46.0 4.10e-01 98.1% 79.2%
5035139 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 46.0 4.18e-01 98.1% 77.0%
4983091 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 46.0 4.22e-01 98.1% 77.0%
4994900 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 44.0 4.13e-01 92.3% 80.8%
5041857 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 46.0 4.16e-01 98.1% 76.3%
3371570 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 46.0 4.08e-01 98.1% 70.0%
3620295 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.51 45.0 3.11e-01 100.0% 73.8%
4485921 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 44.0 4.18e-01 100.0% 80.0%
5052081 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 44.0 3.77e-01 95.2% 65.5%
3457354 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 46.0 4.11e-01 100.0% 75.9%
4118829 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 45.0 4.12e-01 98.1% 73.6%
4283629 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 45.0 4.21e-01 96.2% 80.8%
3817420 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 46.0 3.85e-01 100.0% 72.6%
4265142 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 46.0 4.06e-01 100.0% 72.7%
5032057 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.50 43.0 4.14e-01 100.0% 80.0%
3691694 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.50 41.0 3.85e-01 100.0% 72.8%
D3 medium residues 605-693
PDB
D4 medium residues 694-823
PDB
D5 medium residues 1213-1356
PDB
D6 medium residues 1424-1532
PDB
D7 medium residues 1533-1663
PDB