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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00421
Bact-VirGWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00421
Identity
- Kingdom:
- phage
Quality
51.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 58-135
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6tdxG01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.65 | 52.0 | 3.76e-01 | 85.9% | 94.9% |
D2
medium
residues 136-213_258-319
Domain cluster:
rep: OQ790161.1__WJJ55194.1__X__00317__D7-128
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t7vA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 31.0 | 3.75e-01 | 90.7% | 74.4% |
| 1es0A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 32.0 | 3.68e-01 | 90.7% | 69.7% |
| 3d2uA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 31.0 | 3.75e-01 | 90.7% | 77.2% |
| 1ex0A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 31.0 | 3.62e-01 | 91.4% | 72.6% |
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 31.0 | 3.35e-01 | 87.9% | 61.3% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 37.0 | 4.06e-01 | 97.9% | 82.9% |
| 2vzsA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 31.0 | 3.51e-01 | 92.1% | 76.2% |
| 2oxgC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 30.0 | 3.43e-01 | 91.4% | 74.3% |
| 1xzpB00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.52 | 32.0 | 3.35e-01 | 90.7% | 64.9% |
| 2pn5A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.52 | 26.0 | 3.07e-01 | 91.4% | 66.7% |
| 5eiqA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 25.0 | 3.02e-01 | 90.7% | 67.0% |
| 3lydA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.51 | 36.0 | 3.62e-01 | 87.9% | 71.8% |
| 4f80A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 31.0 | 3.66e-01 | 90.7% | 91.4% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032554 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.67 | 51.0 | 4.81e-01 | 93.6% | 67.3% |
| 4030848 | 1.1.13.52 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_1 | 0.61 | 50.0 | 4.80e-01 | 92.1% | 74.8% |
| 3267187 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 29.0 | 3.47e-01 | 90.7% | 66.3% |
| 3693749 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 28.0 | 2.87e-01 | 92.1% | 44.3% |
| 3457753 | 304.8.1.66 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 | 0.57 | 33.0 | 3.65e-01 | 92.9% | 70.9% |
| 4947239 | 1.1.7.140 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF87 | 0.56 | 32.0 | 3.73e-01 | 91.4% | 79.0% |
| 3698363 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.55 | 43.0 | 3.99e-01 | 93.6% | 63.9% |
| 3678009 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.55 | 23.0 | 3.04e-01 | 86.4% | 68.0% |
| 2879003 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 35.0 | 3.90e-01 | 92.9% | 82.4% |
| 144904 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.54 | 34.0 | 3.64e-01 | 93.6% | 71.2% |
| 3608096 | 331.9.1.4 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla | 0.50 | 32.0 | 3.46e-01 | 75.7% | 75.4% |
| 3993254 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 25.0 | 3.06e-01 | 77.1% | 76.2% |