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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00435

Bact-Vir

GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00435

Identity

Kingdom:
phage

Quality

96.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-106
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wz8A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 52.0 4.57e-01 87.4% 69.6%
4madA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 57.0 5.06e-01 100.0% 73.1%
4xvhA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 53.0 5.12e-01 95.8% 83.2%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 43.0 3.90e-01 91.6% 53.2%
2waaA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 53.0 4.93e-01 95.8% 73.2%
3cc1A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 43.0 4.44e-01 74.7% 77.3%
4a42A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 51.0 4.63e-01 89.5% 67.7%
3a21A03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 50.0 4.89e-01 87.4% 83.2%
3fw6A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 44.0 4.09e-01 74.7% 62.4%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 48.0 4.36e-01 86.3% 80.3%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 43.0 4.45e-01 74.7% 78.0%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.60 37.0 4.46e-01 70.5% 98.3%
2id4A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 48.0 4.25e-01 86.3% 76.1%
2j42A01 3.90.182.10 Alpha Beta › Alpha-Beta Complex › Toxin - Anthrax Protective Antigen; domain 1 › Toxin - Anthrax Protective Antigen;domain 1 0.60 52.0 3.94e-01 95.8% 61.8%
2mngA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 41.0 3.78e-01 89.5% 53.4%
3jqwC00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.59 49.0 4.52e-01 91.6% 90.1%
8a7dC01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 51.0 4.00e-01 100.0% 94.4%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.58 47.0 4.44e-01 88.4% 83.8%
7bysA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 47.0 4.39e-01 89.5% 73.0%
4nzfD02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 40.0 4.14e-01 75.8% 75.6%
4indA02 2.60.120.1310 Mainly Beta › Sandwich › Jelly Rolls › 0.58 48.0 4.55e-01 89.5% 83.9%
1sppB00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.58 45.0 4.34e-01 89.5% 73.2%
2rttA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 47.0 4.56e-01 90.5% 88.6%
4h8wC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 4.35e-01 97.9% 92.0%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 4.28e-01 87.4% 73.0%
2mcaA00 2.60.40.2890 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF5300 0.57 40.0 3.91e-01 73.7% 92.2%
3thpA02 2.60.120.1520 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.96e-01 89.5% 67.8%
7mjrA01 3.90.182.10 Alpha Beta › Alpha-Beta Complex › Toxin - Anthrax Protective Antigen; domain 1 › Toxin - Anthrax Protective Antigen;domain 1 0.56 49.0 3.79e-01 98.9% 64.1%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 4.01e-01 89.5% 84.4%
1sfpA00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.56 44.0 4.24e-01 89.5% 74.8%
6mkbA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 3.83e-01 89.5% 85.0%
2c4xA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 4.45e-01 90.5% 85.1%
1l0qA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 4.26e-01 90.5% 83.3%
2g9gA00 2.60.120.1020 Mainly Beta › Sandwich › Jelly Rolls › PAW domain 0.55 44.0 3.58e-01 89.5% 54.5%
1pqsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 39.0 4.21e-01 74.7% 98.7%
4dxzA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 4.18e-01 89.5% 77.5%
6v55A01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.54 44.0 4.18e-01 89.5% 75.9%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.54 41.0 3.72e-01 81.1% 95.4%
3cu7A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 4.10e-01 88.4% 75.7%
1xe7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 47.0 3.80e-01 97.9% 93.5%
2iciA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 39.0 3.39e-01 76.8% 77.2%
3fl7A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 4.45e-01 90.5% 94.2%
4lplA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 43.0 3.78e-01 98.9% 59.9%
5e6sB02 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.53 43.0 3.78e-01 100.0% 58.1%
2xg5B01 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.53 42.0 3.79e-01 88.4% 77.2%
1wgoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 4.14e-01 87.4% 83.8%
1g7sA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 37.0 3.55e-01 73.7% 88.0%
4umsA01 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 44.0 3.97e-01 100.0% 87.3%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 40.0 3.67e-01 88.4% 64.0%
7y8sB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 4.33e-01 90.5% 97.6%
6b9oA03 2.60.40.1360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.66e-01 72.6% 89.0%
2q3zA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 4.10e-01 88.4% 96.9%
5z06B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 4.11e-01 89.5% 89.1%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5060717 11.1.1.284 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.67 42.0 4.87e-01 81.1% 87.1%
3088569 10.32.1.73 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD_1 0.65 59.0 4.89e-01 100.0% 64.4%
2326112 10.32.1.56 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CE2_N 0.62 53.0 5.13e-01 95.8% 83.3%
3519565 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 48.0 4.69e-01 89.5% 76.2%
4940416 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.61 47.0 5.08e-01 82.1% 100.0%
5082829 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.61 41.0 4.53e-01 76.8% 88.0%
3787693 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.61 42.0 3.39e-01 71.6% 96.1%
3504271 10.32.1.73 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD_1 0.60 54.0 4.83e-01 100.0% 71.1%
5018349 11.1.1.284 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.60 46.0 4.87e-01 97.9% 90.6%
3386406 10.32.1.89 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ape1_N 0.59 45.0 4.03e-01 86.3% 57.0%
4063161 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 44.0 4.47e-01 89.5% 80.0%
5025184 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 47.0 4.46e-01 86.3% 83.5%
2411956 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 46.0 4.18e-01 87.4% 63.2%
3222026 10.4.1.9 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.58 45.0 4.25e-01 90.5% 68.7%
3946137 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 43.0 4.63e-01 89.5% 95.0%
3226838 10.32.1.21 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PAW 0.58 47.0 3.85e-01 88.4% 60.6%
4510460 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.58 46.0 4.32e-01 89.5% 71.3%
5068228 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 47.0 4.61e-01 89.5% 84.8%
3571291 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 42.0 4.09e-01 76.8% 78.1%
3178989 12.1.1.29 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_30C 0.58 41.0 3.90e-01 73.7% 64.5%
3206860 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 40.0 3.95e-01 89.5% 67.3%
3414212 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.57 46.0 4.37e-01 88.4% 75.7%
5024489 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 4.48e-01 93.7% 87.5%
4596166 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.57 45.0 4.41e-01 88.4% 78.1%
3724295 72.1.1.0 beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like 0.56 41.0 4.04e-01 75.8% 73.0%
5056360 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 44.0 4.47e-01 86.3% 86.3%
5038584 11.1.1.284 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.56 41.0 4.25e-01 100.0% 81.1%
3223748 10.32.1.21 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PAW 0.56 45.0 3.77e-01 88.4% 61.2%
3219446 10.4.1.9 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.56 44.0 4.21e-01 89.5% 73.6%
3940996 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.56 45.0 4.29e-01 89.5% 76.3%
3227541 10.4.1.9 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.56 42.0 4.17e-01 89.5% 75.2%
3389378 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.56 45.0 4.22e-01 89.5% 76.7%
3945527 10.32.1.239 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FNIII-A_GpJ 0.55 49.0 4.40e-01 100.0% 97.0%
3992271 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.55 44.0 3.69e-01 89.5% 94.3%
3573728 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.54 44.0 4.11e-01 89.5% 70.8%
4805066 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.54 42.0 4.12e-01 89.5% 75.9%
3879283 10.4.1.23 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CDCP1_CUB_6 0.54 43.0 4.11e-01 89.5% 100.0%
3219055 10.4.1.32 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_M02D8_5_2nd 0.54 44.0 4.03e-01 89.5% 69.6%
4944048 210.1.3.3 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.54 46.0 3.51e-01 97.9% 89.8%
3223001 10.4.1.9 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.54 43.0 4.12e-01 90.5% 73.0%
3516159 109.4.1.88 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MUN 0.53 42.0 2.56e-01 86.3% 18.8%
4442792 11.1.1.67 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 0.53 40.0 3.64e-01 82.1% 92.3%
3216579 12.1.1.34 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.52 38.0 3.93e-01 76.8% 82.2%
4968356 11.1.1.284 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.52 43.0 4.07e-01 90.5% 83.5%
5048726 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 4.03e-01 97.9% 80.0%
5070982 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 3.93e-01 93.7% 94.2%
D2 medium residues 107-251
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF03382.21 best DUF285 118.0 2.90e-34 75.2% 87.5%
PF03382.21 DUF285 95.1 3.60e-27 52.4% 64.2%
D3 medium residues 252-384
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03382.21 best DUF285 86.4 1.80e-24 60.9% 54.2%