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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00436

Bact-Vir

GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00436

Identity

Kingdom:
phage

Quality

73.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 811-863
PDB
Domain cluster: rep: NC_029002.1__YP_009217789.1__AVV41_gp105__00105__D425-479
D2 high residues 872-959
PDB
Domain cluster: rep: BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00008__D242-335
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.69 60.0 6.00e-01 96.6% 100.0%
1qexA02 2.60.120.640 Mainly Beta › Sandwich › Jelly Rolls › gp9 0.64 56.0 5.39e-01 98.9% 97.1%
1xrhA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.59 47.0 3.50e-01 88.6% 84.9%
2esrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 48.0 4.01e-01 93.2% 85.6%
1yezA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 35.0 3.93e-01 93.2% 88.2%
3k0xA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 40.0 3.93e-01 87.5% 80.8%
4i1kA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.51 38.0 3.45e-01 79.5% 89.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4063416 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.77 53.0 4.62e-01 71.6% 69.2%
4941086 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.69 50.0 4.66e-01 75.0% 87.0%
4977196 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.66 52.0 3.81e-01 87.5% 85.5%
4962831 274.1.1.66 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7266 0.65 46.0 4.16e-01 73.9% 90.0%
5040373 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 40.0 4.36e-01 98.9% 91.4%
3739365 2.1.1.43 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_3 0.57 44.0 4.19e-01 87.5% 72.1%
3391557 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.54 40.0 4.17e-01 94.3% 85.0%
4424090 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 38.0 4.04e-01 90.9% 90.7%
4979310 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 37.0 4.01e-01 97.7% 92.0%
4327619 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.51 34.0 3.75e-01 93.2% 85.7%
5042551 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 34.0 3.89e-01 88.6% 98.4%
3307424 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.50 37.0 3.46e-01 79.5% 94.7%
3601825 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 44.0 4.07e-01 100.0% 80.9%
4215867 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.50 34.0 3.67e-01 90.9% 87.1%
D3 medium residues 17-69
PDB
D4 medium residues 170-226
PDB