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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00439
Bact-VirGWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00439
Identity
- Kingdom:
- phage
Quality
84.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 238-331
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rbsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 49.0 | 5.05e-01 | 100.0% | 79.5% |
| 3b43A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 49.0 | 4.88e-01 | 100.0% | 73.2% |
| 5oyjC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 45.0 | 4.54e-01 | 100.0% | 69.5% |
| 2rikA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 47.0 | 4.83e-01 | 100.0% | 78.3% |
| 1dceA02 | 2.60.40.1130 | Mainly Beta › Sandwich › Immunoglobulin-like › Rab geranylgeranyltransferase alpha-subunit, insert domain | 0.64 | 49.0 | 4.83e-01 | 100.0% | 75.7% |
| 5l56A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 44.0 | 4.64e-01 | 100.0% | 83.3% |
| 2petA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 53.0 | 4.96e-01 | 100.0% | 77.6% |
| 5oj2B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 46.0 | 4.57e-01 | 100.0% | 85.4% |
| 4jvuA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 47.0 | 4.51e-01 | 100.0% | 77.3% |
| 5szrA04 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.56 | 43.0 | 4.18e-01 | 100.0% | 73.3% |
| 2woyA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 49.0 | 4.13e-01 | 100.0% | 60.8% |
| 1sixA00 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.54 | 45.0 | 3.88e-01 | 100.0% | 56.9% |
| 6lj3A01 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.54 | 46.0 | 4.03e-01 | 100.0% | 62.7% |
| 7b0xI01 | 2.60.40.1090 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain | 0.54 | 46.0 | 4.24e-01 | 100.0% | 92.4% |
| 2w07B01 | 2.60.40.1090 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain | 0.53 | 46.0 | 4.41e-01 | 100.0% | 90.4% |
| 2f68X01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 40.0 | 3.56e-01 | 100.0% | 54.3% |
| 4q9bA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 42.0 | 4.16e-01 | 100.0% | 82.2% |
| 1dd1A00 | 2.60.200.10 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.52 | 37.0 | 2.86e-01 | 75.5% | 82.4% |
| 2l8aA00 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.52 | 45.0 | 3.96e-01 | 100.0% | 87.9% |
| 3c2qA01 | 2.40.420.10 | Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › conserved putative lor/sdh protein from methanococcus maripaludis s2 domain | 0.52 | 37.0 | 3.83e-01 | 75.5% | 93.2% |
| 2r9qA02 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.51 | 45.0 | 3.81e-01 | 100.0% | 81.0% |
| 2hb0B02 | 2.60.40.2040 | Mainly Beta › Sandwich › Immunoglobulin-like › CFA/I fimbrial subunit E, pilin domain | 0.51 | 44.0 | 3.67e-01 | 100.0% | 79.2% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3899153 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.70 | 54.0 | 5.43e-01 | 98.9% | 82.1% |
| 3259436 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 49.0 | 5.09e-01 | 100.0% | 83.5% |
| 3265132 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 45.0 | 4.97e-01 | 100.0% | 86.7% |
| 5034656 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 50.0 | 5.15e-01 | 100.0% | 85.6% |
| 5021612 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 57.0 | 5.14e-01 | 100.0% | 78.9% |
| 3875538 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.61 | 53.0 | 4.92e-01 | 100.0% | 75.0% |
| 3496968 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 49.0 | 4.46e-01 | 100.0% | 65.6% |
| 4954333 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.60 | 40.0 | 4.20e-01 | 91.5% | 75.3% |
| 1566734 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.60 | 41.0 | 4.43e-01 | 94.7% | 86.8% |
| 4937085 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.59 | 52.0 | 4.80e-01 | 100.0% | 92.0% |
| 3602332 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.56 | 49.0 | 4.39e-01 | 100.0% | 87.7% |
| 2095655 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.56 | 49.0 | 4.54e-01 | 100.0% | 92.7% |
| 4043444 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.56 | 49.0 | 4.66e-01 | 100.0% | 88.7% |
| 4104982 | 11.1.5.19 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adhesin_Dr | 0.56 | 48.0 | 4.41e-01 | 97.9% | 89.6% |
| 3925856 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 46.0 | 4.38e-01 | 100.0% | 76.5% |
| 4881066 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.55 | 43.0 | 4.26e-01 | 98.9% | 79.0% |
| 3476718 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.55 | 49.0 | 4.34e-01 | 100.0% | 80.7% |
| 3478196 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.54 | 49.0 | 4.51e-01 | 100.0% | 80.0% |
| 3863526 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.54 | 45.0 | 4.23e-01 | 100.0% | 75.7% |
| 3390703 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 47.0 | 3.79e-01 | 100.0% | 57.9% |
| 5022717 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 44.0 | 4.12e-01 | 100.0% | 71.7% |
| None | — | 0.53 | 38.0 | 3.99e-01 | 75.5% | 89.4% | |
| 5040885 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 44.0 | 4.19e-01 | 100.0% | 76.5% |
| 4947209 | 6073.1.1.3 ↗ | beta barrels › MMP1218-like › MMP1218-like › MMP1218-like › ArgZ-like_C_2nd | 0.53 | 38.0 | 4.07e-01 | 75.5% | 95.0% |
| 223830 | 6073.1.1.2 ↗ | beta barrels › MMP1218-like › MMP1218-like › MMP1218-like › ArgZ-like_C_1st | 0.52 | 37.0 | 3.83e-01 | 75.5% | 93.2% |
| 3980411 | 11.1.5.58 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF1120 | 0.52 | 45.0 | 3.70e-01 | 100.0% | 56.7% |
| 4944288 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 45.0 | 4.38e-01 | 100.0% | 93.3% |
D2
medium
residues 48-176
Domain cluster:
rep: ON755184.1__UVF61518.1__SEA_DALANDE_105__00105__D152-256
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wzpR01 | 2.30.300.20 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Phage tail base-plate attachment protein, domain D1/D2 | 0.58 | 36.0 | 3.15e-01 | 71.3% | 40.8% |
| 1uoyA01 | 2.30.130.50 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › | 0.57 | 27.0 | 3.77e-01 | 79.1% | 98.2% |
| 3iuwA00 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.54 | 32.0 | 4.00e-01 | 99.2% | 97.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4940002 | 223.1.1.122 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HisKA | 0.57 | 35.0 | 3.07e-01 | 93.8% | 39.5% |
| 4975335 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 35.0 | 3.73e-01 | 93.8% | 70.9% |
| 3621231 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.56 | 21.0 | 3.47e-01 | 99.2% | 100.0% |
| 3562105 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.56 | 21.0 | 3.40e-01 | 100.0% | 97.8% |
| 3727983 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.53 | 21.0 | 2.93e-01 | 100.0% | 70.8% |
| 3630759 | 375.7.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zn-binding domains of ADDBP › Zn-binding domains of ADDBP › Zn_ribbon_GRF | 0.53 | 21.0 | 3.01e-01 | 100.0% | 76.7% |
| 3752656 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.53 | 22.0 | 3.05e-01 | 100.0% | 75.4% |
| 4018632 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.53 | 21.0 | 2.82e-01 | 100.0% | 67.6% |
| 3363865 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.51 | 21.0 | 3.24e-01 | 100.0% | 98.0% |
| 3189012 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.51 | 22.0 | 3.25e-01 | 100.0% | 94.5% |
D3
medium
residues 187-227
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3s6xA01 | 6.20.10.20 | Special › Other non-globular › Laminin › | 0.64 | 50.0 | 4.46e-01 | 100.0% | 59.4% |
| 3sekC02 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.55 | 39.0 | 3.49e-01 | 78.0% | 85.7% |
| 2m74A01 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.55 | 43.0 | 3.84e-01 | 100.0% | 91.3% |
| 1x0gA00 | 2.60.300.12 | Mainly Beta › Sandwich › Hypothetical Protein Aq_1857; Chain: A; › HesB-like domain | 0.54 | 39.0 | 3.04e-01 | 100.0% | 33.3% |
| 2wcyA01 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.51 | 39.0 | 3.35e-01 | 90.2% | 84.0% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 35.0 | 2.74e-01 | 100.0% | 31.6% |
| 7uvpA03 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.50 | 34.0 | 2.57e-01 | 80.5% | 66.9% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2321116 | 53.1.1.0 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral | 0.63 | 49.0 | 4.27e-01 | 100.0% | 53.2% |
| 1080995 | 53.1.1.3 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Reo_sigmaC_M | 0.61 | 46.0 | 4.60e-01 | 90.2% | 84.4% |
| 3516911 | 300.1.1.2 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II | 0.51 | 34.0 | 2.38e-01 | 70.7% | 72.7% |