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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00442
Bact-VirGWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00442
Identity
- Kingdom:
- phage
Quality
61.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-115
D2
high
residues 666-800
Domain cluster:
rep: NC_062736.1__YP_010355701.1__M1M14_gp089__00089__D42-164
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3isrA02 | 2.60.40.2250 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.70 | 41.0 | 4.72e-01 | 99.3% | 78.0% |
| 3bpsA02 | 2.60.120.690 | Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 | 0.68 | 41.0 | 3.98e-01 | 100.0% | 52.7% |
| 6cl5A01 | 2.60.40.3940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.67 | 43.0 | 4.87e-01 | 98.5% | 85.3% |
| 4d6gA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.67 | 38.0 | 3.96e-01 | 97.8% | 58.5% |
| 6mw4A01 | 2.60.120.1290 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 49.0 | 4.98e-01 | 98.5% | 79.2% |
| 3wmqA00 | 2.60.40.2080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 42.0 | 4.93e-01 | 97.0% | 95.7% |
| 1y9qA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 39.0 | 4.62e-01 | 100.0% | 88.2% |
| 2q30A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 38.0 | 4.66e-01 | 99.3% | 90.9% |
| 2ozjA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 36.0 | 4.01e-01 | 98.5% | 69.7% |
| 1sefA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 38.0 | 4.03e-01 | 98.5% | 67.2% |
| 4b29A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 36.0 | 3.16e-01 | 100.0% | 39.5% |
| 2pfwA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 36.0 | 3.92e-01 | 98.5% | 68.5% |
| 3cewA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 37.0 | 4.09e-01 | 98.5% | 72.7% |
| 2ww8A02 | 2.60.40.2110 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 46.0 | 4.02e-01 | 99.3% | 53.5% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.60 | 44.0 | 3.54e-01 | 76.3% | 93.5% |
| 1gqgC01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 35.0 | 3.52e-01 | 100.0% | 56.4% |
| 5j7mA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 36.0 | 3.77e-01 | 96.3% | 65.6% |
| 5dl5A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.60 | 45.0 | 3.16e-01 | 77.8% | 33.2% |
| 3h7jA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 36.0 | 3.97e-01 | 97.0% | 73.6% |
| 1ohfA02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 54.0 | 4.15e-01 | 100.0% | 90.9% |
| 4jb9H01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 44.0 | 4.52e-01 | 97.8% | 82.4% |
| 5wxuA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 37.0 | 3.45e-01 | 97.0% | 53.1% |
| 3dwoX00 | 2.40.160.60 | Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) | 0.57 | 48.0 | 3.35e-01 | 89.6% | 59.7% |
| 1s55A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 53.0 | 5.03e-01 | 100.0% | 98.1% |
| 4bcuA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 52.0 | 4.64e-01 | 100.0% | 91.5% |
| 5a2fA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 38.0 | 4.17e-01 | 93.3% | 83.9% |
| 4rft000 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 51.0 | 4.82e-01 | 100.0% | 96.3% |
| 1mkfA02 | 2.60.40.1340 | Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like | 0.55 | 49.0 | 4.49e-01 | 95.6% | 93.6% |
| 1stmA00 | 2.60.120.220 | Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain | 0.55 | 50.0 | 4.96e-01 | 100.0% | 95.0% |
| 2w3sB04 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.54 | 39.0 | 3.43e-01 | 74.8% | 72.0% |
| 3i7dA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 39.0 | 3.69e-01 | 97.8% | 63.1% |
| 2g19A00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.54 | 40.0 | 3.41e-01 | 100.0% | 48.1% |
| 1cov100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 48.0 | 3.87e-01 | 98.5% | 68.4% |
| 2pn5A08 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 40.0 | 4.31e-01 | 98.5% | 94.6% |
| 4lr4A01 | 2.60.120.1420 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 38.0 | 3.51e-01 | 96.3% | 56.2% |
| 1bev100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 49.0 | 3.89e-01 | 100.0% | 65.7% |
| 2b39A10 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 42.0 | 4.50e-01 | 99.3% | 97.4% |
| 3jb8A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 48.0 | 4.35e-01 | 100.0% | 94.1% |
| 7mjrA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 46.0 | 4.73e-01 | 94.8% | 100.0% |
| 2obdA01 | 3.15.20.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 | 0.52 | 48.0 | 3.76e-01 | 100.0% | 67.8% |
| 2vvfA02 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 45.0 | 4.61e-01 | 100.0% | 96.1% |
| 5jqyA02 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.52 | 36.0 | 3.18e-01 | 100.0% | 49.5% |
| 1opoA02 | 2.60.40.1780 | Mainly Beta › Sandwich › Immunoglobulin-like › Carmovirus coat protein | 0.52 | 37.0 | 4.15e-01 | 93.3% | 98.1% |
| 1tlyA00 | 2.40.230.20 | Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Nucleoside-specific channel-forming protein, Tsx-like | 0.50 | 40.0 | 3.34e-01 | 86.7% | 57.4% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1165730 | 10.20.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N_2 | 0.71 | 42.0 | 4.79e-01 | 100.0% | 78.2% |
| 3964117 | 4182.1.1.3 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C | 0.69 | 43.0 | 4.97e-01 | 98.5% | 87.4% |
| 3952750 | 10.20.1.0 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease | 0.69 | 41.0 | 4.70e-01 | 100.0% | 80.0% |
| 3604637 | 4182.1.1.3 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C | 0.68 | 43.0 | 4.67e-01 | 98.5% | 74.8% |
| 3715744 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.67 | 41.0 | 4.48e-01 | 99.3% | 73.6% |
| 3205036 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.67 | 51.0 | 4.10e-01 | 100.0% | 43.3% |
| 3637401 | 4081.1.1.8 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 | 0.67 | 50.0 | 4.24e-01 | 100.0% | 48.2% |
| 3398675 | 4182.1.1.0 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like | 0.66 | 45.0 | 4.89e-01 | 98.5% | 81.7% |
| 3907235 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.65 | 49.0 | 4.07e-01 | 100.0% | 46.7% |
| 3289166 | 10.20.1.2 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N | 0.65 | 40.0 | 4.28e-01 | 100.0% | 70.0% |
| 3875549 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.64 | 47.0 | 4.11e-01 | 100.0% | 51.8% |
| 4304754 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.64 | 54.0 | 4.15e-01 | 91.1% | 96.1% |
| 3960488 | 10.20.1.0 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease | 0.64 | 40.0 | 4.23e-01 | 100.0% | 70.6% |
| 4636176 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.64 | 53.0 | 4.02e-01 | 88.9% | 96.9% |
| 4669372 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.63 | 53.0 | 4.05e-01 | 89.6% | 96.1% |
| 4009827 | 5084.5.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD | 0.63 | 49.0 | 3.49e-01 | 82.2% | 100.0% |
| 4329332 | 5084.5.1.18 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C | 0.63 | 47.0 | 3.34e-01 | 77.0% | 90.2% |
| 3285854 | 4182.1.1.0 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like | 0.63 | 50.0 | 5.10e-01 | 99.3% | 87.6% |
| 3962499 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 30.0 | 3.86e-01 | 73.3% | 80.0% |
| 4039744 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.62 | 52.0 | 3.91e-01 | 88.9% | 95.7% |
| 3990321 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 33.0 | 3.75e-01 | 88.1% | 69.0% |
| 3860289 | 11.1.1.297 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 | 0.60 | 45.0 | 4.32e-01 | 99.3% | 67.7% |
| 3966665 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.60 | 46.0 | 3.23e-01 | 80.7% | 100.0% |
| 3967063 | 5084.1.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg | 0.60 | 51.0 | 3.98e-01 | 90.4% | 99.6% |
| 1734923 | 5084.5.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD | 0.60 | 45.0 | 3.16e-01 | 77.8% | 33.3% |
| 3419963 | 11.2.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 | 0.59 | 41.0 | 4.26e-01 | 81.5% | 76.8% |
| 3961820 | 10.20.1.2 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N | 0.59 | 37.0 | 4.05e-01 | 99.3% | 76.4% |
| 3275901 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.58 | 46.0 | 4.98e-01 | 98.5% | 98.3% |
| 3592053 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.58 | 44.0 | 3.81e-01 | 79.3% | 95.2% |
| 3980921 | 5084.5.1.18 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C | 0.58 | 43.0 | 3.24e-01 | 77.0% | 92.4% |
| 4449402 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.58 | 44.0 | 3.49e-01 | 80.0% | 84.6% |
| 4006163 | 5084.5.4.13 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › DUF481, Porin_OmpG | 0.57 | 46.0 | 3.58e-01 | 87.4% | 75.3% |
| 1111985 | 10.32.1.82 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM-like_2 | 0.56 | 40.0 | 3.55e-01 | 98.5% | 49.7% |
| 3165307 | 5084.5.4.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › Toluene_X | 0.56 | 45.0 | 3.21e-01 | 87.4% | 100.0% |
| 1236 | 10.2.1.42 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Potex_coat | 0.55 | 50.0 | 4.96e-01 | 100.0% | 95.0% |
| 3926092 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.55 | 42.0 | 4.00e-01 | 81.5% | 97.6% |
| 4168239 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.55 | 41.0 | 3.22e-01 | 77.8% | 91.4% |
| 3648715 | 11.2.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 | 0.55 | 38.0 | 3.99e-01 | 80.0% | 77.6% |
| 3980865 | 5084.1.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg | 0.54 | 47.0 | 3.80e-01 | 95.6% | 99.3% |
| 3888419 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.54 | 41.0 | 3.31e-01 | 80.0% | 90.9% |
| 5022112 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.54 | 39.0 | 3.52e-01 | 76.3% | 96.8% |
| 3941948 | 5084.5.1.18 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C | 0.53 | 44.0 | 3.32e-01 | 87.4% | 65.2% |
| 3968722 | 5084.6.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Tsx-like channel › Tsx-like channel | 0.52 | 45.0 | 3.69e-01 | 94.8% | 98.8% |
| 3889537 | 11.2.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF29592 | 0.52 | 39.0 | 4.02e-01 | 97.8% | 84.0% |
| 3276320 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.52 | 37.0 | 3.80e-01 | 74.8% | 99.2% |
| 3626193 | 5090.1.1.8 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF | 0.52 | 44.0 | 3.22e-01 | 93.3% | 98.2% |
| 3781408 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 36.0 | 3.21e-01 | 71.1% | 82.5% |
| 3481307 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.51 | 41.0 | 4.13e-01 | 100.0% | 84.3% |
| 4949090 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.51 | 30.0 | 3.44e-01 | 74.8% | 80.0% |
| 3446391 | 11.2.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 | 0.51 | 39.0 | 3.52e-01 | 80.7% | 72.4% |
| 4042627 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.51 | 45.0 | 4.21e-01 | 99.3% | 100.0% |
D3
medium
residues 166-223
D4
medium
residues 491-574_608-622