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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00466

Bact-Vir

GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00466

Identity

Kingdom:
phage

Quality

85.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-90
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.65 46.0 4.68e-01 78.8% 75.9%
6cngA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.65 44.0 3.87e-01 70.6% 84.4%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.63 56.0 4.93e-01 100.0% 83.9%
3nctA00 3.40.50.11880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Plasmid SOS inhibition protein 0.62 50.0 4.32e-01 89.4% 65.0%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.61 39.0 3.95e-01 70.6% 64.4%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 52.0 4.40e-01 100.0% 79.3%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 43.0 4.01e-01 76.5% 86.1%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 53.0 3.96e-01 100.0% 67.3%
2r0hA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 52.0 4.28e-01 100.0% 81.2%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.59 48.0 4.50e-01 90.6% 95.3%
2zgoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 51.0 4.20e-01 100.0% 76.6%
3u1kC01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.58 44.0 3.29e-01 82.4% 96.9%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.58 44.0 3.73e-01 82.4% 81.8%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.58 45.0 3.71e-01 83.5% 48.1%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 42.0 4.69e-01 77.6% 100.0%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 4.27e-01 97.6% 87.1%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 4.47e-01 90.6% 98.4%
2xp1A02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 45.0 4.63e-01 84.7% 96.2%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 41.0 3.89e-01 80.0% 90.7%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.68e-01 95.3% 100.0%
3h6qA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 43.0 3.52e-01 84.7% 99.4%
1f2uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 47.0 3.95e-01 95.3% 88.6%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 3.84e-01 92.9% 72.7%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.55 48.0 3.43e-01 98.8% 90.1%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 48.0 3.64e-01 100.0% 87.7%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 2.78e-01 88.2% 51.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 3.99e-01 84.7% 77.1%
1k8kD02 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 44.0 3.89e-01 90.6% 84.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 35.0 3.87e-01 84.7% 83.3%
2rkcA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 41.0 2.72e-01 82.4% 91.2%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 45.0 3.58e-01 92.9% 92.7%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.57e-01 76.5% 100.0%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 41.0 4.00e-01 83.5% 83.2%
1q47A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.65e-01 88.2% 52.7%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.52 42.0 4.37e-01 87.1% 100.0%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 34.0 3.88e-01 82.4% 100.0%
2w16A03 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.51 43.0 2.68e-01 95.3% 87.7%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.51 44.0 3.55e-01 98.8% 75.9%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 34.0 3.75e-01 82.4% 89.2%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 38.0 3.81e-01 91.8% 78.0%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 44.0 3.02e-01 97.6% 75.0%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 36.0 3.50e-01 80.0% 66.0%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4971822 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 49.0 3.85e-01 70.6% 86.3%
4995784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 50.0 5.26e-01 90.6% 84.0%
3474038 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.68 58.0 4.92e-01 94.1% 98.6%
3937047 9.1.1.55 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7045 0.68 54.0 4.85e-01 87.1% 95.0%
4259027 9.3.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.66 45.0 4.03e-01 71.8% 96.7%
4074315 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.64 54.0 4.27e-01 92.9% 94.3%
3194888 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.63 48.0 3.95e-01 81.2% 43.8%
3391245 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.63 56.0 4.63e-01 100.0% 80.6%
3279470 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 46.0 4.52e-01 92.9% 72.2%
3489188 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.63 48.0 4.07e-01 82.4% 54.9%
4528719 4.1.1.438 ↗ beta barrels › SH3 › SH3 › SH3 › PF27440 0.63 45.0 4.97e-01 78.8% 100.0%
4959306 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 46.0 3.11e-01 78.8% 80.9%
4998774 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.61 54.0 3.37e-01 97.6% 92.2%
4311344 4252.1.1.13 ↗ beta barrels › AttH-like › AttH-like › AttH-like › PF27123 0.61 47.0 4.31e-01 83.5% 87.8%
3935469 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.61 46.0 5.03e-01 84.7% 100.0%
3967347 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 45.0 4.74e-01 89.4% 89.3%
3387119 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.60 43.0 4.26e-01 94.1% 71.1%
4029521 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 50.0 3.94e-01 90.6% 62.9%
4133336 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.60 52.0 4.27e-01 100.0% 79.3%
1077 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.60 52.0 4.39e-01 100.0% 79.3%
1123620 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.59 52.0 4.27e-01 100.0% 77.3%
5022491 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.59 47.0 4.71e-01 100.0% 89.4%
3228098 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.58 46.0 4.37e-01 87.1% 87.6%
3786425 241.6.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › P34-Arc 0.58 47.0 4.16e-01 90.6% 96.2%
5008209 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 45.0 4.69e-01 85.9% 96.2%
4953759 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 37.0 4.31e-01 72.9% 95.0%
3890539 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 39.0 4.32e-01 75.3% 100.0%
3781386 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 43.0 2.88e-01 82.4% 87.3%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 43.0 4.29e-01 91.8% 78.9%
3192750 5.1.4.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.56 48.0 3.04e-01 94.1% 52.9%
3269834 220.1.1.95 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.56 42.0 3.77e-01 81.2% 76.8%
3492557 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.56 41.0 3.92e-01 90.6% 67.0%
1146605 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.55 41.0 3.34e-01 82.4% 87.6%
3413401 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 46.0 2.89e-01 94.1% 72.5%
3831169 5.1.5.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.54 46.0 3.24e-01 92.9% 45.8%
3806012 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.54 49.0 3.27e-01 100.0% 95.2%
3619712 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.54 43.0 2.70e-01 88.2% 42.1%
3573649 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.54 45.0 2.76e-01 90.6% 33.3%
3744781 109.4.1.69 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IKI3 0.54 44.0 3.01e-01 88.2% 69.7%
3926118 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.54 37.0 4.18e-01 75.3% 100.0%
3481353 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 47.0 3.13e-01 96.5% 95.4%
3225189 5.1.4.369 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N 0.54 48.0 2.76e-01 100.0% 51.1%
2516764 71.1.1.4 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › MucB_RseB 0.54 44.0 3.54e-01 94.1% 84.8%
3875477 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.54 47.0 3.53e-01 100.0% 71.8%
3226744 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 40.0 4.02e-01 82.4% 98.9%
4011111 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.30e-01 90.6% 76.2%
3893892 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 40.0 4.17e-01 82.4% 100.0%
3737927 220.1.1.294 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26663 0.53 40.0 3.69e-01 81.2% 72.7%
3607792 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 3.04e-01 94.1% 59.1%
4079197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 35.0 3.58e-01 85.9% 69.4%
3335404 4.1.1.350 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7589 0.51 41.0 3.61e-01 90.6% 92.6%
3227009 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.51 36.0 3.74e-01 90.6% 85.3%