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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00481
Bact-VirGWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00481
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-68
Domain cluster:
rep: pig_ID_3630_F33_scaffold_4_curated_closed_complete_prodigal-single.1__X__X__00237__D4-72
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ku9B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 50.0 | 4.50e-01 | 80.6% | 64.4% |
| 3b4qA00 | 1.10.1200.100 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae | 0.66 | 56.0 | 5.10e-01 | 100.0% | 74.7% |
| 4nb5B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 48.0 | 4.42e-01 | 80.6% | 67.1% |
| 5jbrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 48.0 | 4.34e-01 | 80.6% | 66.3% |
| 1nxuA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.63 | 47.0 | 4.33e-01 | 79.0% | 78.5% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 49.0 | 4.62e-01 | 87.1% | 80.8% |
| 3i0pA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.60 | 44.0 | 3.61e-01 | 77.4% | 59.3% |
| 3kp1E02 | 1.10.8.1000 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ornithine 4,5 aminomutase S component, alpha subunit-like | 0.59 | 41.0 | 3.99e-01 | 72.6% | 87.1% |
| 1tj7A03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.57 | 42.0 | 4.10e-01 | 95.2% | 73.2% |
| 1dcnA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.57 | 42.0 | 4.12e-01 | 96.8% | 73.6% |
| 2pjqA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.56 | 40.0 | 3.66e-01 | 79.0% | 60.7% |
| 3djbA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.56 | 42.0 | 3.73e-01 | 85.5% | 65.6% |
| 4z4qA04 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.54 | 35.0 | 3.19e-01 | 93.5% | 47.2% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 32.0 | 3.30e-01 | 100.0% | 62.3% |
| 3ibyD02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 48.0 | 4.27e-01 | 100.0% | 82.1% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4388317 | 2005.1.1.25 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › HIGH_NTase1 | 0.76 | 60.0 | 3.81e-01 | 100.0% | 17.7% |
| 5069786 | 3808.1.1.0 ↗ | alpha arrays › Archaeal protein SSO6904 › Archaeal protein SSO6904 › Archaeal protein SSO6904 | 0.75 | 54.0 | 5.22e-01 | 96.8% | 67.1% |
| 5049143 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 54.0 | 4.47e-01 | 79.0% | 50.0% |
| 5011454 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.72 | 53.0 | 4.23e-01 | 79.0% | 40.0% |
| 3286591 | 101.1.2.612 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2, PF27059 | 0.71 | 52.0 | 3.93e-01 | 79.0% | 37.6% |
| None | — | 0.69 | 59.0 | 3.89e-01 | 100.0% | 24.2% | |
| 1296342 | 101.1.2.456 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_MmpR5 | 0.68 | 51.0 | 3.86e-01 | 80.6% | 38.8% |
| 1822527 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.68 | 50.0 | 3.84e-01 | 80.6% | 39.6% |
| 2600 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.67 | 50.0 | 3.80e-01 | 80.6% | 37.1% |
| 4250419 | 2005.1.1.25 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › HIGH_NTase1 | 0.64 | 55.0 | 3.30e-01 | 100.0% | 13.6% |
| 4104496 | 1197.1.1.1 ↗ | alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf | 0.63 | 53.0 | 3.85e-01 | 100.0% | 40.0% |
| 4943361 | 1197.1.1.1 ↗ | alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf | 0.63 | 54.0 | 3.78e-01 | 98.4% | 34.4% |
| 5013384 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.63 | 46.0 | 3.55e-01 | 80.6% | 34.7% |
| 4190039 | 1197.1.1.1 ↗ | alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf | 0.62 | 52.0 | 3.78e-01 | 98.4% | 37.9% |
| 4093182 | 1197.1.1.1 ↗ | alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf | 0.61 | 51.0 | 3.67e-01 | 98.4% | 38.0% |
| 5059609 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.61 | 46.0 | 3.98e-01 | 79.0% | 56.7% |
| 4065157 | 2005.1.1.25 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › HIGH_NTase1 | 0.60 | 53.0 | 3.25e-01 | 100.0% | 16.0% |
| 3629401 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.57 | 46.0 | 4.48e-01 | 91.9% | 88.6% |
| 3798173 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 45.0 | 4.43e-01 | 93.5% | 90.0% |
| 5063037 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.56 | 38.0 | 3.95e-01 | 72.6% | 80.0% |
| 3327241 | 604.12.1.13 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › HR_lesion | 0.54 | 40.0 | 3.77e-01 | 82.3% | 83.7% |
| 3890414 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 42.0 | 4.08e-01 | 91.9% | 80.0% |