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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00493
Bact-VirGWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00493
Identity
- Kingdom:
- phage
Quality
85.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-71
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mndA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.69 | 55.0 | 3.77e-01 | 87.3% | 37.2% |
| 2knaA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.67 | 44.0 | 4.49e-01 | 76.4% | 68.5% |
| 1z6oA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.66 | 57.0 | 3.86e-01 | 98.2% | 53.8% |
| 1jeyB03 | 1.10.1600.10 | Mainly Alpha › Orthogonal Bundle › Ku70; Chain: A; domain 4 › | 0.62 | 42.0 | 3.41e-01 | 74.5% | 37.3% |
| 4jqfA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 43.0 | 4.02e-01 | 78.2% | 57.5% |
| 3ooqA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.60 | 55.0 | 3.38e-01 | 100.0% | 26.5% |
| 2oyhA00 | 1.20.5.50 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 53.0 | 5.04e-01 | 100.0% | 85.9% |
| 1zchA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.57 | 48.0 | 3.18e-01 | 98.2% | 59.0% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.55 | 47.0 | 4.62e-01 | 100.0% | 88.7% |
| 6azyA01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.54 | 43.0 | 3.29e-01 | 87.3% | 68.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3650081 | 3168.1.1.2 ↗ | extended segments › 40S ribosomal protein S30 (S30e) › 40S ribosomal protein S30 (S30e) › 40S ribosomal protein S30 (S30e) › SDE2 | 0.79 | 67.0 | 5.61e-01 | 100.0% | 56.7% |
| 3439564 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.76 | 68.0 | 4.68e-01 | 100.0% | 42.2% |
| 5050687 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.74 | 67.0 | 4.79e-01 | 100.0% | 35.5% |
| 4995732 | 604.32.1.0 ↗ | alpha bundles › Spectrin repeat-like › Recombination protein uvsY › Recombination protein uvsY | 0.71 | 63.0 | 4.68e-01 | 100.0% | 41.4% |
| 3647082 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 48.0 | 4.01e-01 | 74.5% | 47.4% |
| 2647599 | 101.1.1.244 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_TIMELESS | 0.60 | 37.0 | 3.46e-01 | 83.6% | 45.9% |
| 4927325 | 103.7.1.1 ↗ | alpha arrays › RuvA-C › Hypothetical protein MTH1615 › Hypothetical protein MTH1615 › dsDNA_bind | 0.56 | 41.0 | 3.80e-01 | 81.8% | 58.7% |
| 4214371 | 7524.1.1.2 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh | 0.54 | 46.0 | 2.82e-01 | 98.2% | 69.2% |
| 4639006 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.51 | 38.0 | 2.55e-01 | 87.3% | 38.2% |