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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00497

Bact-Vir

GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00497

Identity

Kingdom:
phage

Quality

71.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-152
PDB
Domain cluster: rep: BML_08042016_6_5m_scaffold_2_prodigal-single.1__X__X__00262__D12-118
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.59 37.0 3.96e-01 85.3% 74.2%
1kaeA03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.58 27.0 3.90e-01 91.4% 94.5%
2fbnA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 39.0 3.65e-01 100.0% 54.2%
2gw1A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 41.0 2.94e-01 100.0% 24.7%
4d0nB01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.55 44.0 3.45e-01 84.5% 79.2%
1s3qG00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 43.0 3.87e-01 85.3% 79.8%
2cqsA04 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.53 45.0 3.13e-01 92.2% 38.5%
1cw1A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.53 47.0 3.24e-01 98.3% 83.4%
1zb1A00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.53 48.0 3.36e-01 100.0% 58.9%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.53 38.0 4.07e-01 85.3% 89.8%
3ty4B00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.51 45.0 3.25e-01 99.1% 88.5%
4f53A00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 44.0 2.96e-01 98.3% 96.6%
2psmA00 1.20.1250.70 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 0.51 34.0 3.45e-01 86.2% 68.4%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.50 44.0 3.23e-01 98.3% 84.6%
3r2kA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.50 39.0 3.65e-01 86.2% 83.8%
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.50 39.0 3.62e-01 83.6% 91.3%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053298 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.82 67.0 6.05e-01 86.2% 75.5%
5058480 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.75 69.0 6.21e-01 100.0% 81.9%
4033957 4070.1.1.4 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50B 0.70 62.0 4.85e-01 96.6% 76.2%
4370527 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.67 40.0 4.04e-01 100.0% 59.1%
4981647 4070.1.1.4 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50B 0.66 62.0 5.19e-01 100.0% 77.1%
4946547 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 52.0 5.15e-01 83.6% 90.8%
3792368 109.4.1.626 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRAPPC9-Trs120 0.64 39.0 3.51e-01 100.0% 43.0%
4222712 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 45.0 3.88e-01 99.1% 46.8%
4355508 109.4.1.5 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.62 45.0 3.91e-01 99.1% 48.1%
4254676 109.4.1.890 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C 0.60 37.0 3.86e-01 100.0% 64.5%
3263375 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.60 42.0 3.72e-01 100.0% 47.8%
3167983 109.4.1.890 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C 0.59 38.0 3.42e-01 100.0% 46.3%
3263650 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 46.0 2.85e-01 93.1% 35.4%
3698681 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 47.0 3.41e-01 100.0% 38.9%
3846411 109.4.1.2145 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CCDC142, CC142_N 0.53 46.0 2.94e-01 96.6% 19.8%
3537707 109.4.1.735 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UBA 0.52 43.0 3.28e-01 89.7% 47.7%
3620882 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.52 30.0 2.93e-01 78.4% 48.8%
3639059 601.7.1.50 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Gaa1 0.52 37.0 3.05e-01 75.0% 46.8%
3276289 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.52 41.0 3.40e-01 87.9% 89.3%
3580289 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.50 44.0 4.39e-01 99.1% 99.2%