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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00503
Bact-VirGWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00503
Identity
- Kingdom:
- phage
Quality
89.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-78
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xmbA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.72 | 63.0 | 5.67e-01 | 93.5% | 94.1% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 60.0 | 5.16e-01 | 90.9% | 96.5% |
| 1yz7A02 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.70 | 58.0 | 5.51e-01 | 88.3% | 95.6% |
| 8c46A01 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 59.0 | 5.13e-01 | 90.9% | 97.4% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.65 | 41.0 | 4.33e-01 | 93.5% | 74.2% |
| 2ahoB03 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.64 | 51.0 | 4.92e-01 | 87.0% | 98.9% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.62 | 44.0 | 4.75e-01 | 100.0% | 92.1% |
| 5kfzA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.62 | 43.0 | 3.72e-01 | 74.0% | 94.3% |
| 1u8sA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 51.0 | 4.92e-01 | 90.9% | 93.0% |
| 1xjkA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.60 | 45.0 | 2.67e-01 | 80.5% | 74.0% |
| 3rgzA02 | 3.30.1490.310 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.60 | 41.0 | 4.50e-01 | 97.4% | 90.2% |
| 1zpvA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 51.0 | 5.00e-01 | 94.8% | 97.6% |
| 1o22A00 | 3.90.1000.10 | Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 | 0.59 | 48.0 | 3.93e-01 | 90.9% | 99.3% |
| 1c9rA04 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.59 | 45.0 | 4.11e-01 | 84.4% | 91.6% |
| 2hiyA01 | 3.30.70.1280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains | 0.58 | 51.0 | 4.90e-01 | 100.0% | 98.9% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 49.0 | 4.82e-01 | 94.8% | 100.0% |
| 3n0vA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 47.0 | 4.59e-01 | 94.8% | 100.0% |
| 6aj3B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 45.0 | 3.56e-01 | 90.9% | 78.3% |
| 2cfxA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.55 | 47.0 | 4.51e-01 | 96.1% | 87.8% |
| 7dodB01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 45.0 | 3.39e-01 | 90.9% | 53.4% |
| 2yq1C00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.55 | 45.0 | 3.81e-01 | 90.9% | 64.9% |
| 3nrbB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 45.0 | 4.48e-01 | 94.8% | 100.0% |
| 4rrfA01 | 3.50.80.10 | Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-tyrosyl-tRNA(Tyr) deacylase | 0.53 | 47.0 | 3.85e-01 | 97.4% | 88.2% |
| 6k2eA01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 41.0 | 4.36e-01 | 89.6% | 98.5% |
| 3vvvA00 | 2.60.40.2840 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 41.0 | 3.69e-01 | 84.4% | 75.0% |
| 6p3xB01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 45.0 | 3.47e-01 | 98.7% | 68.9% |
| 3psfA03 | 1.10.3500.10 | Mainly Alpha › Orthogonal Bundle › Tex N-terminal region-like › Tex N-terminal region-like | 0.51 | 40.0 | 2.71e-01 | 96.1% | 21.5% |
| 1wsrA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.50 | 40.0 | 3.82e-01 | 88.3% | 100.0% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3965161 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.65 | 58.0 | 3.98e-01 | 98.7% | 41.9% |
| 3732370 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.65 | 44.0 | 4.80e-01 | 90.9% | 90.0% |
| 5055256 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.62 | 51.0 | 4.96e-01 | 88.3% | 89.4% |
| 3970706 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.61 | 49.0 | 4.16e-01 | 88.3% | 93.1% |
| 5055561 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.60 | 48.0 | 4.23e-01 | 89.6% | 73.3% |
| 4989167 | 304.134.1.0 ↗ | a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like | 0.60 | 51.0 | 4.73e-01 | 92.2% | 95.8% |
| 3873803 | 327.11.2.27 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin | 0.58 | 51.0 | 4.84e-01 | 97.4% | 96.7% |
| 2816600 | 304.28.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › NPC1_MLD | 0.57 | 46.0 | 3.26e-01 | 89.6% | 84.6% |
| 3272085 | 206.1.1.16 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › IucA_IucC,FhuF | 0.57 | 45.0 | 2.75e-01 | 85.7% | 31.1% |
| 3185133 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.57 | 47.0 | 3.99e-01 | 89.6% | 84.0% |
| 3790632 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.57 | 47.0 | 3.75e-01 | 92.2% | 83.1% |
| 5001976 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.56 | 47.0 | 4.59e-01 | 92.2% | 94.1% |
| 3740761 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.56 | 50.0 | 3.61e-01 | 100.0% | 68.2% |
| 3940639 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.56 | 45.0 | 3.53e-01 | 89.6% | 98.8% |
| 3927761 | 2003.1.5.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth | 0.55 | 39.0 | 2.62e-01 | 75.3% | 73.9% |
| 3602915 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 36.0 | 3.47e-01 | 96.1% | 55.8% |
| 5041187 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 42.0 | 3.80e-01 | 98.7% | 60.0% |
| 4593662 | 3397.1.1.0 ↗ | a+b complex topology › Tic22 › Tic22 › Tic22 | 0.54 | 40.0 | 3.41e-01 | 90.9% | 47.7% |
| 4942818 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.54 | 46.0 | 3.80e-01 | 96.1% | 74.3% |
| 3300115 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.54 | 45.0 | 4.09e-01 | 93.5% | 73.3% |
| 3844363 | 2007.9.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › IL17_R_N | 0.53 | 38.0 | 3.39e-01 | 97.4% | 51.3% |
| 3723069 | 4342.1.1.1 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region | 0.53 | 43.0 | 3.07e-01 | 92.2% | 64.3% |
| 4505133 | 5067.1.1.26 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL, Sterol-sensing | 0.52 | 42.0 | 2.40e-01 | 88.3% | 60.7% |
| 5028017 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.52 | 44.0 | 4.15e-01 | 96.1% | 86.3% |
| 4932870 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 41.0 | 4.11e-01 | 88.3% | 97.5% |
| 4977019 | 3662.1.1.4 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC_bac | 0.51 | 36.0 | 3.10e-01 | 80.5% | 45.6% |
| 4162386 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.50 | 40.0 | 3.08e-01 | 87.0% | 82.2% |