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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00526
Bact-VirGWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00526
Identity
- Kingdom:
- phage
Quality
81.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-44
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2o0jA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.88 | 79.0 | 4.75e-01 | 100.0% | 16.5% |
| 1gu2A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.62 | 47.0 | 3.41e-01 | 85.7% | 69.4% |
| 3ezjA03 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.60 | 35.0 | 3.21e-01 | 100.0% | 40.0% |
| 7npaA02 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 34.0 | 2.73e-01 | 88.1% | 27.1% |
| 4kw3A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.58 | 46.0 | 2.92e-01 | 100.0% | 73.7% |
| 3rk6A00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 45.0 | 2.96e-01 | 97.6% | 61.8% |
| 2z2mD01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.57 | 41.0 | 3.73e-01 | 88.1% | 55.9% |
| 4fo9A01 | 2.60.120.780 | Mainly Beta › Sandwich › Jelly Rolls › PINIT domain | 0.56 | 37.0 | 2.74e-01 | 71.4% | 71.5% |
| 3qf7A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 45.0 | 2.82e-01 | 100.0% | 42.2% |
| 4ha8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 37.0 | 3.36e-01 | 85.7% | 44.4% |
| 1on2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 3.45e-01 | 83.3% | 83.3% |
| 4ncbA02 | 3.30.70.2620 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 33.0 | 2.73e-01 | 92.9% | 34.2% |
| 3zqcA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.52 | 34.0 | 3.12e-01 | 95.2% | 43.8% |
| 1h0hA02 | 3.40.50.740 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 38.0 | 2.52e-01 | 95.2% | 59.4% |
| 2yyiA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 35.0 | 2.36e-01 | 73.8% | 16.6% |
| 2yzkA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 36.0 | 2.51e-01 | 81.0% | 97.7% |
| 1zxeC02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.51 | 37.0 | 2.56e-01 | 97.6% | 20.4% |
| 3qw4B02 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 34.0 | 2.32e-01 | 83.3% | 15.6% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 317607 | 2004.1.1.99 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_6N | 0.88 | 79.0 | 4.53e-01 | 100.0% | 11.7% |
| 4978789 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 49.0 | 3.90e-01 | 90.5% | 38.9% |
| 3404153 | 210.2.1.0 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain | 0.62 | 47.0 | 2.84e-01 | 95.2% | 11.0% |
| 4005987 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 43.0 | 3.22e-01 | 97.6% | 28.8% |
| 3417192 | 327.11.2.27 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin | 0.58 | 35.0 | 3.36e-01 | 100.0% | 52.0% |
| 3775826 | 4016.1.1.0 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase | 0.57 | 44.0 | 3.07e-01 | 85.7% | 27.6% |
| 3376780 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.57 | 34.0 | 2.69e-01 | 78.6% | 25.9% |
| 4928248 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 37.0 | 2.74e-01 | 92.9% | 22.3% |
| 4557681 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.56 | 38.0 | 3.18e-01 | 92.9% | 37.5% |
| 3563605 | 109.4.1.1145 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IQ | 0.56 | 46.0 | 2.56e-01 | 95.2% | 26.0% |
| 4251053 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.55 | 43.0 | 2.68e-01 | 85.7% | 15.3% |
| 5036196 | 2002.1.1.57 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D | 0.55 | 37.0 | 2.34e-01 | 73.8% | 10.8% |
| 3590781 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.55 | 36.0 | 2.97e-01 | 92.9% | 32.2% |
| 3924850 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.54 | 42.0 | 3.08e-01 | 90.5% | 32.8% |
| 3409935 | 377.1.1.18 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-AD | 0.54 | 42.0 | 3.48e-01 | 92.9% | 56.5% |
| 3611776 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.54 | 44.0 | 3.13e-01 | 95.2% | 28.6% |
| 3538512 | 3892.1.1.0 ↗ | alpha bundles › Transhydrogeanse domain II › Transhydrogeanse domain II › Transhydrogeanse domain II | 0.54 | 44.0 | 3.02e-01 | 95.2% | 58.7% |
| 3687833 | 5073.1.1.18 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Hydrolase | 0.53 | 42.0 | 2.40e-01 | 100.0% | 62.3% |
| 3812685 | 807.1.1.0 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) | 0.52 | 34.0 | 3.35e-01 | 78.6% | 61.4% |
| 3647311 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.52 | 37.0 | 2.30e-01 | 88.1% | 10.3% |
| 3659927 | 7573.1.1.0 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like | 0.51 | 38.0 | 2.57e-01 | 92.9% | 79.1% |
| 3291533 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.50 | 40.0 | 3.18e-01 | 92.9% | 43.5% |
| 4367775 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.50 | 39.0 | 2.39e-01 | 100.0% | 13.7% |