Back to structures

GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00544

Bact-Vir

GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00544

Identity

Kingdom:
phage

Quality

83.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-58
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 53.0 5.12e-01 100.0% 76.6%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 55.0 5.42e-01 100.0% 90.2%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.69e-01 100.0% 84.9%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 54.0 4.59e-01 100.0% 61.3%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 54.0 5.38e-01 100.0% 98.2%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.61 51.0 3.54e-01 96.4% 30.9%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 53.0 5.23e-01 100.0% 93.4%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.53e-01 100.0% 82.1%
2dlpA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 52.0 4.60e-01 100.0% 65.9%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.60 38.0 3.84e-01 100.0% 63.2%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.60 43.0 4.51e-01 100.0% 91.7%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.38e-01 98.2% 80.0%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 52.0 4.99e-01 100.0% 84.8%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 51.0 4.93e-01 100.0% 92.1%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 51.0 4.89e-01 100.0% 90.9%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 50.0 4.76e-01 100.0% 88.2%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 51.0 4.86e-01 100.0% 89.4%
6efaA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 41.0 3.76e-01 75.0% 98.7%
1dj7B00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.59 50.0 4.68e-01 100.0% 93.2%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 41.0 3.22e-01 76.8% 67.2%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.16e-01 100.0% 73.0%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.58 35.0 3.61e-01 78.6% 62.7%
1ri9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 48.0 4.40e-01 98.2% 71.4%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 4.40e-01 100.0% 70.4%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 49.0 4.85e-01 100.0% 93.3%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 49.0 4.82e-01 100.0% 91.7%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 3.65e-01 100.0% 51.1%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 48.0 4.82e-01 100.0% 94.9%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 48.0 4.69e-01 100.0% 92.2%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 4.22e-01 100.0% 83.6%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 4.22e-01 100.0% 72.9%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 4.11e-01 100.0% 77.6%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 46.0 4.23e-01 100.0% 71.8%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 4.33e-01 100.0% 83.9%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.91e-01 100.0% 69.0%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 45.0 3.69e-01 96.4% 63.3%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 4.34e-01 96.4% 95.7%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 44.0 2.66e-01 96.4% 89.1%
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 3.51e-01 96.4% 90.9%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 37.0 3.47e-01 96.4% 58.3%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 4.12e-01 100.0% 83.9%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 43.0 4.36e-01 100.0% 98.1%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 2.60e-01 96.4% 78.9%
3ab1B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 40.0 2.82e-01 94.6% 71.7%
2hqmA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 43.0 2.89e-01 100.0% 80.3%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4948250 4.1.1.301 beta barrels › SH3 › SH3 › SH3 › MJ1316 0.65 50.0 4.84e-01 100.0% 75.4%
4214438 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 47.0 4.53e-01 100.0% 70.8%
3396897 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 55.0 5.33e-01 100.0% 92.1%
3621818 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.63 45.0 4.72e-01 100.0% 88.0%
3725260 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 56.0 5.19e-01 100.0% 80.0%
3479350 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 54.0 4.74e-01 100.0% 64.7%
3529708 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 54.0 4.95e-01 100.0% 74.7%
3505111 4.1.1.318 beta barrels › SH3 › SH3 › SH3 › PF26085 0.62 53.0 4.57e-01 100.0% 60.2%
3514867 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 52.0 4.74e-01 100.0% 72.0%
3880325 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 53.0 4.94e-01 96.4% 77.1%
3413864 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 52.0 3.81e-01 100.0% 36.4%
3702915 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 52.0 5.17e-01 100.0% 91.7%
3840076 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.61 52.0 5.13e-01 98.2% 100.0%
3514453 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 52.0 4.78e-01 100.0% 73.3%
3415045 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 52.0 4.89e-01 100.0% 78.6%
4520767 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.61 52.0 4.90e-01 100.0% 87.1%
4081631 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 54.0 4.91e-01 100.0% 74.7%
3482676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 52.0 5.10e-01 100.0% 95.0%
3496355 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 51.0 5.17e-01 98.2% 98.2%
3498145 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 52.0 4.99e-01 100.0% 85.9%
4038705 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.60 51.0 4.92e-01 100.0% 95.4%
3924338 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 51.0 4.83e-01 100.0% 78.6%
3899828 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 51.0 4.61e-01 100.0% 68.8%
3995675 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 51.0 5.07e-01 100.0% 95.0%
3487936 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.79e-01 100.0% 78.6%
3485745 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 52.0 5.10e-01 100.0% 93.3%
3776390 4.1.1.91 beta barrels › SH3 › SH3 › SH3 › hSH3 0.59 51.0 4.12e-01 100.0% 48.7%
3782325 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 52.0 5.07e-01 100.0% 88.9%
3882733 3935.1.1.1 extended segments › 4E-BP2 › 4E-BP2 › 4E-BP2 › eIF_4EBP 0.59 38.0 3.65e-01 91.1% 54.4%
3626531 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 50.0 4.34e-01 100.0% 61.1%
3600486 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.21e-01 100.0% 55.0%
3621642 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 50.0 4.52e-01 100.0% 68.8%
1489661 3935.1.1.1 extended segments › 4E-BP2 › 4E-BP2 › 4E-BP2 › eIF_4EBP 0.59 37.0 3.99e-01 91.1% 80.0%
3573620 4.1.1.318 beta barrels › SH3 › SH3 › SH3 › PF26085 0.59 48.0 4.78e-01 94.6% 88.3%
3890893 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 50.0 5.06e-01 96.4% 100.0%
3246255 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 50.0 4.71e-01 100.0% 78.6%
4003181 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 50.0 4.95e-01 98.2% 96.7%
3843554 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 50.0 4.74e-01 100.0% 80.0%
4537356 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.58 49.0 4.81e-01 96.4% 100.0%
3898952 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 51.0 4.65e-01 100.0% 74.7%
3484007 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.68e-01 100.0% 80.0%
3897880 3935.1.1.1 extended segments › 4E-BP2 › 4E-BP2 › 4E-BP2 › eIF_4EBP 0.58 38.0 3.84e-01 91.1% 69.1%
1263713 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.58 43.0 4.41e-01 100.0% 88.5%
3930643 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.45e-01 100.0% 83.3%
3915732 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 50.0 4.39e-01 100.0% 65.9%
1289661 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.57 42.0 4.02e-01 100.0% 67.2%
None 0.57 47.0 3.09e-01 92.9% 26.2%
2646217 5.1.2.34 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › PQQ_2 0.57 45.0 4.34e-01 89.3% 96.9%
4861382 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.57 46.0 3.38e-01 92.9% 39.4%
3990001 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.57 42.0 4.35e-01 91.1% 88.7%
3022801 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 48.0 4.26e-01 100.0% 67.8%
3900733 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 48.0 4.52e-01 100.0% 80.0%
3385856 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.56 47.0 4.59e-01 100.0% 95.2%
3165077 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.56 47.0 4.46e-01 98.2% 87.1%
4861381 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.56 44.0 3.96e-01 89.3% 76.2%
4091771 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.33e-01 100.0% 85.0%
1527848 5.1.4.26 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Reg_prop 0.55 45.0 2.80e-01 92.9% 17.5%
3989485 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.55 42.0 4.41e-01 96.4% 94.0%
3224532 3534.1.1.3 beta barrels › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › DUF4505 0.55 45.0 4.02e-01 94.6% 69.9%
3998283 3534.1.1.3 beta barrels › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › DUF4505 0.55 44.0 3.97e-01 94.6% 68.2%
3934126 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.37e-01 100.0% 86.7%
3025579 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 45.0 4.50e-01 100.0% 96.7%
3779830 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.54 43.0 3.83e-01 100.0% 58.9%
3556601 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.54 44.0 4.22e-01 100.0% 81.5%
3656948 5.1.3.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N 0.53 44.0 2.74e-01 92.9% 18.2%
3581336 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 44.0 3.63e-01 100.0% 50.9%
3926672 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 43.0 4.21e-01 100.0% 84.6%
5024227 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 45.0 4.32e-01 96.4% 90.5%
3569289 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.51 43.0 3.90e-01 98.2% 86.3%
4178829 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.51 43.0 3.43e-01 100.0% 66.4%
3939481 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.51 36.0 2.45e-01 78.6% 41.2%