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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00581
Bact-VirGWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00581
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-102
Domain cluster:
rep: IMGVR_UViG_3300009682_000056-3300009682-Ga0116172_1000479815__D6-96
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.66 | 45.0 | 4.29e-01 | 92.9% | 58.8% |
| 1t4aA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.64 | 49.0 | 5.46e-01 | 90.9% | 100.0% |
| 1egjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 37.0 | 3.67e-01 | 93.9% | 54.5% |
| 3gqcC04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.64 | 47.0 | 4.40e-01 | 90.9% | 63.3% |
| 2cuwA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.62 | 48.0 | 5.20e-01 | 89.9% | 100.0% |
| 5wm1A05 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.62 | 45.0 | 4.29e-01 | 90.9% | 65.0% |
| 2zw2A00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.60 | 48.0 | 5.08e-01 | 89.9% | 100.0% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 44.0 | 3.80e-01 | 78.8% | 95.7% |
| 1vq3B00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.59 | 46.0 | 4.93e-01 | 91.9% | 97.6% |
| 6a6yA00 | 2.60.40.1490 | Mainly Beta › Sandwich › Immunoglobulin-like › Histone chaperone ASF1-like | 0.57 | 38.0 | 3.33e-01 | 100.0% | 44.1% |
| 3hqiA01 | 2.60.210.10 | Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 0.56 | 38.0 | 3.44e-01 | 90.9% | 50.4% |
| 1c0pA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.55 | 48.0 | 4.13e-01 | 100.0% | 59.5% |
| 1ekrA00 | 3.30.70.640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain | 0.55 | 47.0 | 4.15e-01 | 92.9% | 89.5% |
| 1o91A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 45.0 | 4.11e-01 | 92.9% | 66.4% |
| 1h2cA00 | 2.70.20.20 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain | 0.54 | 46.0 | 4.29e-01 | 93.9% | 96.0% |
| 1r8gA00 | 3.30.590.20 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › | 0.54 | 46.0 | 3.18e-01 | 94.9% | 59.9% |
| 3tvkA00 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.54 | 48.0 | 3.99e-01 | 98.0% | 62.2% |
| 3c0nB03 | 2.170.15.10 | Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › Proaerolysin, chain A, domain 3 | 0.54 | 46.0 | 3.70e-01 | 91.9% | 82.4% |
| 2zaiA04 | 2.60.40.3030 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 48.0 | 4.36e-01 | 99.0% | 97.0% |
| 1qd1A01 | 3.30.990.10 | Alpha Beta › 2-Layer Sandwich › Formiminotransferase-cyclodeaminase; Chain B, domain 1 › Formiminotransferase, N-terminal subdomain | 0.53 | 42.0 | 3.49e-01 | 85.9% | 100.0% |
| 5gxdA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.52 | 40.0 | 3.64e-01 | 80.8% | 62.4% |
| 3ufiA02 | 2.60.40.2630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 36.0 | 3.38e-01 | 90.9% | 56.8% |
| 4oumA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 42.0 | 3.81e-01 | 92.9% | 65.2% |
| 6d9mA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.52 | 46.0 | 4.00e-01 | 99.0% | 74.8% |
| 3ramA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 44.0 | 4.18e-01 | 93.9% | 100.0% |
| 7mjrA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 42.0 | 3.84e-01 | 92.9% | 67.2% |
| 7altB01 | 2.60.40.3510 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 41.0 | 3.57e-01 | 90.9% | 99.4% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3892842 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.68 | 43.0 | 5.14e-01 | 89.9% | 98.5% |
| 3818973 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.65 | 47.0 | 4.28e-01 | 90.9% | 57.7% |
| 3418391 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.64 | 47.0 | 4.34e-01 | 90.9% | 60.0% |
| 3211244 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.64 | 47.0 | 4.27e-01 | 90.9% | 58.5% |
| 3414649 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.64 | 46.0 | 4.21e-01 | 90.9% | 56.3% |
| 3561203 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.63 | 47.0 | 4.28e-01 | 89.9% | 59.2% |
| 4028174 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.62 | 46.0 | 4.18e-01 | 89.9% | 57.0% |
| 3511452 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.62 | 45.0 | 4.23e-01 | 90.9% | 60.8% |
| 3784315 | 868.1.1.3 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 | 0.62 | 50.0 | 3.72e-01 | 85.9% | 94.5% |
| 3477118 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.61 | 45.0 | 4.14e-01 | 91.9% | 59.2% |
| 4940484 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.61 | 46.0 | 5.04e-01 | 84.8% | 100.0% |
| 4225330 | 303.1.1.2 ↗ | a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › HDC | 0.61 | 51.0 | 3.97e-01 | 99.0% | 40.3% |
| 4668962 | 303.1.1.0 ↗ | a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases | 0.60 | 54.0 | 4.36e-01 | 100.0% | 82.1% |
| 4066969 | 303.1.1.1 ↗ | a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC | 0.59 | 52.0 | 4.25e-01 | 99.0% | 82.1% |
| 3511991 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.59 | 38.0 | 3.67e-01 | 91.9% | 58.2% |
| 3839282 | 11.1.1.449 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF2393 | 0.57 | 39.0 | 3.94e-01 | 88.9% | 69.7% |
| 3506521 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 38.0 | 3.61e-01 | 94.9% | 56.7% |
| 3468462 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.55 | 39.0 | 3.71e-01 | 93.9% | 61.7% |
| 4963894 | 11.1.1.1442 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29449 | 0.52 | 36.0 | 3.51e-01 | 91.9% | 63.6% |
| 1158630 | 6009.1.1.1 ↗ | a+b complex topology › Insertion domain in Adenovirus penton base protein › Insertion domain in Adenovirus penton base protein › Insertion domain in Adenovirus penton base protein › Adeno_Penton_B | 0.52 | 43.0 | 3.31e-01 | 92.9% | 53.3% |
| 2528175 | 6009.1.1.0 ↗ | a+b complex topology › Insertion domain in Adenovirus penton base protein › Insertion domain in Adenovirus penton base protein › Insertion domain in Adenovirus penton base protein | 0.52 | 43.0 | 3.28e-01 | 92.9% | 51.8% |
| 3821499 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.52 | 45.0 | 3.37e-01 | 96.0% | 68.6% |
| 5005662 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 39.0 | 3.35e-01 | 92.9% | 51.6% |
| 3464581 | 323.1.1.11 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › PapA_C | 0.50 | 44.0 | 3.14e-01 | 96.0% | 57.6% |
| 3282303 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.50 | 41.0 | 3.06e-01 | 87.9% | 82.8% |
D2
high
residues 105-199
Domain cluster:
rep: IMGVR_UViG_3300009682_000056-3300009682-Ga0116172_1000479815__D99-183