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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00583
Bact-VirGWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00583
Identity
- Kingdom:
- phage
Quality
71.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-72
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gzaA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.75 | 53.0 | 4.10e-01 | 75.5% | 78.7% |
| 5kmpB00 | 3.50.50.100 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › | 0.73 | 45.0 | 2.66e-01 | 100.0% | 7.8% |
| 2rdgA02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.70 | 60.0 | 5.35e-01 | 98.0% | 90.1% |
| 4ebgA00 | 3.10.450.560 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.69 | 49.0 | 3.91e-01 | 75.5% | 64.9% |
| 3d31A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 55.0 | 5.70e-01 | 100.0% | 100.0% |
| 5agvA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.67 | 57.0 | 4.28e-01 | 100.0% | 58.8% |
| 1gbgA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 51.0 | 3.41e-01 | 89.8% | 50.5% |
| 5ocrA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 50.0 | 3.22e-01 | 93.9% | 50.7% |
| 4chjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 47.0 | 3.46e-01 | 79.6% | 41.1% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.61 | 53.0 | 3.60e-01 | 100.0% | 35.8% |
| 3pweA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.61 | 49.0 | 3.87e-01 | 100.0% | 50.4% |
| 3fw3B00 | 3.10.200.10 | Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase | 0.60 | 47.0 | 3.05e-01 | 89.8% | 47.5% |
| 1b9mB02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.60 | 49.0 | 4.41e-01 | 93.9% | 70.8% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.60 | 50.0 | 3.89e-01 | 100.0% | 61.7% |
| 2z1cB00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 49.0 | 4.41e-01 | 100.0% | 66.2% |
| 2yyzA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.60 | 51.0 | 4.90e-01 | 100.0% | 96.6% |
| 1w1hD00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 43.0 | 3.23e-01 | 100.0% | 29.2% |
| 8aasC01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 49.0 | 4.01e-01 | 100.0% | 61.8% |
| 1jd0B00 | 3.10.200.10 | Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase | 0.59 | 45.0 | 2.93e-01 | 89.8% | 48.3% |
| 3igfA02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 50.0 | 4.44e-01 | 100.0% | 73.0% |
| 5fl4A00 | 3.10.200.10 | Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase | 0.58 | 45.0 | 2.93e-01 | 89.8% | 51.0% |
| 3jxfA00 | 3.10.200.10 | Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase | 0.57 | 44.0 | 2.85e-01 | 89.8% | 49.3% |
| 3f8tA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 46.0 | 4.09e-01 | 100.0% | 92.5% |
| 3asiA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 48.0 | 3.34e-01 | 100.0% | 44.4% |
| 3zsjA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 41.0 | 3.03e-01 | 79.6% | 68.8% |
| 5eb9A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 46.0 | 3.63e-01 | 100.0% | 67.0% |
| 7qu9A01 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.54 | 44.0 | 2.62e-01 | 95.9% | 77.0% |
| 2gu9A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 45.0 | 3.56e-01 | 93.9% | 95.1% |
| 3n91A02 | 2.40.128.420 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 46.0 | 3.42e-01 | 100.0% | 78.7% |
| 5edxA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 3.51e-01 | 100.0% | 65.8% |
| 6hrgA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 45.0 | 2.99e-01 | 100.0% | 94.4% |
| 6bjqA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 45.0 | 3.77e-01 | 100.0% | 93.2% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 42.0 | 3.83e-01 | 98.0% | 66.7% |
| 3kd9A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 46.0 | 3.15e-01 | 100.0% | 41.9% |
| 3ufiA02 | 2.60.40.2630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 41.0 | 3.18e-01 | 93.9% | 92.0% |
| 3htnB00 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.51 | 40.0 | 2.99e-01 | 89.8% | 80.6% |
| 3oc4B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 45.0 | 3.04e-01 | 100.0% | 59.3% |
| 5xctB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 43.0 | 3.41e-01 | 100.0% | 62.5% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5017215 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 64.0 | 6.23e-01 | 100.0% | 98.2% |
| 4947996 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 58.0 | 5.63e-01 | 100.0% | 100.0% |
| 3988949 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.69 | 47.0 | 3.16e-01 | 71.4% | 19.4% |
| 2896523 | 2.4.1.7 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK | 0.67 | 53.0 | 5.06e-01 | 89.8% | 81.0% |
| 4978946 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 55.0 | 5.29e-01 | 100.0% | 90.0% |
| 3918172 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 57.0 | 3.24e-01 | 100.0% | 10.5% |
| 3240894 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.66 | 55.0 | 3.54e-01 | 100.0% | 32.8% |
| 3615326 | 7039.1.1.0 ↗ | a+b complex topology › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM | 0.66 | 53.0 | 3.38e-01 | 91.8% | 76.9% |
| 4926929 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 55.0 | 5.36e-01 | 100.0% | 96.4% |
| 5033076 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 51.0 | 5.08e-01 | 98.0% | 96.4% |
| 144176 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.65 | 54.0 | 4.17e-01 | 100.0% | 83.1% |
| 5080835 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 52.0 | 5.12e-01 | 98.0% | 96.4% |
| 4011093 | 319.1.1.14 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HECT_2 | 0.63 | 54.0 | 4.38e-01 | 100.0% | 57.0% |
| 4146527 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.63 | 53.0 | 4.01e-01 | 100.0% | 80.8% |
| 3166329 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.63 | 51.0 | 3.83e-01 | 89.8% | 40.8% |
| 3573853 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.62 | 46.0 | 4.47e-01 | 95.9% | 70.9% |
| 5072874 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 53.0 | 4.89e-01 | 100.0% | 87.7% |
| 5062579 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 54.0 | 4.74e-01 | 100.0% | 81.3% |
| 4983078 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 51.0 | 4.51e-01 | 95.9% | 72.0% |
| 3388278 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 51.0 | 3.20e-01 | 98.0% | 26.3% |
| 4995743 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.60 | 54.0 | 4.02e-01 | 100.0% | 65.0% |
| 4547801 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 42.0 | 3.39e-01 | 71.4% | 47.8% |
| 4968717 | 319.1.1.4 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 | 0.60 | 51.0 | 4.53e-01 | 100.0% | 70.7% |
| 5977 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.60 | 50.0 | 3.89e-01 | 100.0% | 61.7% |
| 4938286 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.60 | 51.0 | 3.94e-01 | 100.0% | 42.6% |
| 3509390 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.59 | 44.0 | 3.32e-01 | 79.6% | 75.0% |
| 3608202 | 77.3.1.3 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN | 0.59 | 38.0 | 2.85e-01 | 100.0% | 26.4% |
| 3213331 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.59 | 42.0 | 4.19e-01 | 98.0% | 73.6% |
| 4984069 | 4111.1.1.2 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC | 0.59 | 46.0 | 3.40e-01 | 89.8% | 75.7% |
| 4210866 | 319.1.1.4 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 | 0.58 | 50.0 | 4.24e-01 | 100.0% | 60.0% |
| 4994958 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 46.0 | 4.52e-01 | 100.0% | 100.0% |
| 4952337 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.58 | 49.0 | 4.00e-01 | 100.0% | 57.0% |
| 5047776 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.58 | 47.0 | 4.35e-01 | 100.0% | 74.3% |
| 3931199 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.58 | 42.0 | 4.38e-01 | 95.9% | 88.9% |
| 3994222 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.58 | 48.0 | 3.29e-01 | 100.0% | 52.0% |
| 5039058 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.58 | 46.0 | 4.47e-01 | 100.0% | 88.3% |
| 3395549 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.57 | 43.0 | 4.07e-01 | 98.0% | 67.8% |
| 2841967 | 5089.1.1.7 ↗ | beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › PF26164 | 0.56 | 47.0 | 3.05e-01 | 100.0% | 37.9% |
| 4608534 | 10.1.1.11 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 | 0.55 | 41.0 | 2.65e-01 | 89.8% | 36.3% |
| 1885880 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.55 | 46.0 | 3.63e-01 | 100.0% | 67.0% |
| 4221307 | 880.1.1.1 ↗ | a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind | 0.54 | 43.0 | 2.58e-01 | 100.0% | 76.0% |
| 5065077 | 4111.1.1.2 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC | 0.54 | 41.0 | 3.08e-01 | 89.8% | 77.0% |
| 3907645 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.53 | 44.0 | 3.14e-01 | 100.0% | 43.4% |
| 4027494 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.53 | 43.0 | 3.35e-01 | 100.0% | 62.3% |
| 3214084 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.53 | 41.0 | 3.05e-01 | 100.0% | 68.8% |
| 999477 | 11.1.4.22 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Mfa_like_1 | 0.52 | 41.0 | 3.16e-01 | 93.9% | 89.8% |
| 4466937 | 11.1.1.248 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG6 | 0.51 | 44.0 | 3.31e-01 | 100.0% | 84.6% |
| 4976414 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 38.0 | 3.10e-01 | 83.7% | 74.7% |