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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00662

Bact-Vir

GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00662

Identity

Kingdom:
phage

Quality

74.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-49
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3po3S02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.78 68.0 5.70e-01 100.0% 60.8%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.75 62.0 6.16e-01 93.0% 93.3%
1twfI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.75 64.0 5.37e-01 100.0% 57.9%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.74 64.0 5.89e-01 100.0% 77.2%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.72 61.0 5.98e-01 100.0% 91.7%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 48.0 3.48e-01 100.0% 24.8%
3kh8A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.67 53.0 3.99e-01 100.0% 82.7%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 4.92e-01 100.0% 74.6%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 47.0 4.16e-01 93.0% 52.2%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.64 47.0 4.74e-01 95.3% 79.5%
1nqzA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.64 46.0 3.19e-01 83.7% 76.6%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.61e-01 100.0% 69.5%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.56e-01 100.0% 76.3%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.74e-01 97.7% 81.6%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 52.0 4.34e-01 100.0% 57.5%
1mzpA01 3.30.190.20 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribosomal protein L1/L10, rRNA-binding domain 0.61 48.0 3.55e-01 93.0% 90.5%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.61 50.0 3.81e-01 100.0% 41.6%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.61 49.0 3.61e-01 93.0% 75.8%
2kumA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 44.0 4.14e-01 93.0% 63.2%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.60 48.0 4.07e-01 95.3% 52.6%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 50.0 4.92e-01 100.0% 89.4%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 47.0 4.01e-01 100.0% 63.9%
1b7yA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.58 47.0 2.96e-01 97.7% 19.2%
1zy9A03 2.60.40.2760 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 43.0 4.37e-01 100.0% 83.7%
3bdlA03 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 45.0 3.38e-01 95.3% 64.0%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.05e-01 100.0% 64.6%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.54 42.0 3.81e-01 97.7% 65.7%
1lv9A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 41.0 3.69e-01 86.0% 60.9%
2y8tA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.52 38.0 3.56e-01 83.7% 63.6%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4945758 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.86 78.0 6.53e-01 100.0% 64.3%
3705742 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.85 75.0 6.83e-01 100.0% 77.6%
4937130 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.83 75.0 6.47e-01 100.0% 67.7%
3199611 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.82 73.0 6.39e-01 100.0% 68.8%
3755722 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.82 72.0 4.68e-01 97.7% 25.1%
3598298 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.81 71.0 6.32e-01 97.7% 78.3%
3804890 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.81 71.0 6.44e-01 100.0% 74.6%
3737071 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.81 71.0 6.42e-01 100.0% 74.6%
3495913 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.81 71.0 6.39e-01 100.0% 73.3%
4929592 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 63.0 6.56e-01 93.0% 94.9%
5038934 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.80 71.0 6.46e-01 100.0% 77.6%
4013714 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 70.0 6.84e-01 100.0% 93.8%
3445009 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.80 71.0 4.62e-01 100.0% 25.1%
3309343 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.80 70.0 6.49e-01 100.0% 81.8%
3933561 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 68.0 5.05e-01 95.3% 41.9%
5054449 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.79 70.0 5.98e-01 100.0% 63.8%
3816604 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.79 68.0 5.93e-01 97.7% 66.2%
5060010 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 63.0 6.29e-01 95.3% 86.7%
4963635 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.78 68.0 5.87e-01 100.0% 65.2%
5028865 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 68.0 6.49e-01 100.0% 88.0%
3702281 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.77 61.0 5.71e-01 93.0% 70.9%
3781077 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.76 64.0 4.79e-01 93.0% 42.7%
3704822 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 66.0 4.44e-01 100.0% 27.6%
5048721 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.76 66.0 5.79e-01 100.0% 69.2%
4962274 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 66.0 6.51e-01 97.7% 97.8%
3606500 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.74 60.0 5.43e-01 95.3% 66.7%
4927858 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 63.0 5.83e-01 100.0% 76.4%
4028728 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.72 61.0 5.69e-01 100.0% 78.2%
4014828 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 60.0 5.64e-01 100.0% 80.0%
3484306 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.70 55.0 5.44e-01 97.7% 84.4%
3496242 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 58.0 5.59e-01 100.0% 94.0%
4440689 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.68 48.0 4.24e-01 93.0% 50.8%
4959885 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.68 58.0 4.72e-01 100.0% 57.6%
3930705 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.67 59.0 4.52e-01 100.0% 47.0%
5046714 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.67 54.0 5.58e-01 95.3% 100.0%
3720868 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.67 50.0 3.17e-01 86.0% 15.4%
3497371 10.13.1.0 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.66 56.0 3.76e-01 100.0% 78.7%
4998035 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 54.0 5.15e-01 93.0% 96.0%
3426675 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.66 50.0 4.57e-01 97.7% 62.7%
4565130 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 56.0 4.36e-01 97.7% 46.3%
4941366 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 50.0 5.13e-01 95.3% 95.0%
3589900 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 56.0 4.56e-01 100.0% 50.6%
4970648 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.64 52.0 5.11e-01 100.0% 94.0%
3712451 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 54.0 3.99e-01 100.0% 36.0%
4927803 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 51.0 4.95e-01 95.3% 80.0%
3828070 252.1.1.0 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.64 48.0 4.55e-01 97.7% 67.3%
3801858 252.1.1.0 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.64 51.0 4.68e-01 97.7% 66.7%
3714156 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 53.0 4.38e-01 100.0% 52.9%
5028776 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 52.0 5.01e-01 95.3% 82.0%
5030510 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 49.0 4.73e-01 88.4% 74.0%
3461840 361.1.1.0 few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain 0.63 42.0 4.55e-01 93.0% 100.0%
3905549 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 53.0 4.11e-01 100.0% 41.0%
3348638 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.63 50.0 3.73e-01 90.7% 41.7%
3642693 101.11.1.7 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › RNase_PH 0.62 42.0 3.41e-01 76.7% 34.4%
3730229 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.62 50.0 4.38e-01 100.0% 64.0%
5004850 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.62 52.0 5.03e-01 100.0% 92.0%
4991472 246.2.1.9 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.62 44.0 3.00e-01 79.1% 96.6%
5030452 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 49.0 4.90e-01 97.7% 91.1%
3781787 222.1.1.27 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 0.61 47.0 3.79e-01 100.0% 98.2%
3570368 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 51.0 3.99e-01 97.7% 42.0%
3408588 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.61 50.0 4.45e-01 100.0% 61.4%
3731905 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 43.0 3.82e-01 95.3% 50.8%
3204334 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.61 49.0 4.72e-01 93.0% 80.0%
3819081 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.61 50.0 3.07e-01 100.0% 14.1%
3393358 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 49.0 4.01e-01 100.0% 47.4%
3591144 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 50.0 3.56e-01 100.0% 34.0%
3907024 260.1.1.1 a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin 0.60 45.0 2.71e-01 83.7% 15.6%
4992543 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 48.0 4.48e-01 97.7% 72.7%
5081200 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 49.0 4.47e-01 95.3% 73.3%
4228426 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.59 53.0 3.99e-01 100.0% 81.0%
3787905 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 49.0 4.31e-01 100.0% 74.3%
3656401 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.25e-01 100.0% 57.3%
5028378 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 48.0 4.83e-01 97.7% 93.3%
3408330 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 49.0 3.85e-01 100.0% 45.0%
3922387 260.1.1.1 a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin 0.57 49.0 2.74e-01 100.0% 12.7%
3922903 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.56 47.0 4.33e-01 97.7% 70.0%
3346241 252.1.1.0 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.56 39.0 3.80e-01 90.7% 64.0%
4452122 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.56 48.0 3.50e-01 97.7% 88.6%
3251940 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.55 45.0 3.92e-01 100.0% 57.3%
3720866 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 42.0 3.83e-01 93.0% 61.5%
3835809 387.1.1.0 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.53 41.0 4.17e-01 97.7% 100.0%
3481726 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 43.0 3.97e-01 95.3% 81.7%
3623810 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 38.0 3.16e-01 93.0% 100.0%