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G

Euk-Vir

Kumasi_rhabdovirus

G__YP_009177013__Kumasi_rhabdovirus__1537975

Identity

Accession:
YP_009177013 ↗
Protein ID:
G
Kingdom:
euk

Quality

79.0 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Ledantevirus› Kumasi_rhabdovirus

TaxID: 1537975

Cluster

View cluster (70 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-70_307-443
PDB
Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24833.2 best Rhabdo_glycop_CD 95.4 3.90e-27 72.3% 83.5%
D2 medium residues 74-93_216-306
PDB
Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.76 61.0 6.63e-01 91.0% 100.0%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.74 60.0 6.43e-01 90.1% 100.0%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 50.0 5.02e-01 82.9% 100.0%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 49.0 4.74e-01 83.8% 89.6%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.55 42.0 4.17e-01 81.1% 88.0%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 29.0 3.67e-01 76.6% 93.2%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 28.0 3.53e-01 78.4% 92.1%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.52 43.0 3.29e-01 92.8% 68.9%
2lw3A00 2.60.40.2880 Mainly Beta › Sandwich › Immunoglobulin-like › MmpS1-5, C-terminal soluble domain 0.52 29.0 3.17e-01 90.1% 65.6%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 29.0 3.55e-01 78.4% 92.2%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 28.0 3.34e-01 75.7% 79.7%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 37.0 3.56e-01 77.5% 87.8%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 28.0 3.43e-01 82.9% 90.6%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 29.0 3.42e-01 80.2% 89.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3913945 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 53.0 5.08e-01 82.0% 91.4%
4547666 220.1.1.71 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Inp1 0.62 49.0 4.78e-01 85.6% 97.6%
3398379 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 48.0 4.72e-01 82.9% 90.0%
3723768 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 35.0 3.85e-01 77.5% 70.0%
3659671 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.58 33.0 4.03e-01 76.6% 88.6%
3488995 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 28.0 3.46e-01 82.9% 84.6%
3270256 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 27.0 3.48e-01 75.7% 91.5%
3234923 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 28.0 3.54e-01 75.7% 90.5%
3482676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 28.0 3.57e-01 75.7% 95.0%
3482680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 29.0 3.56e-01 78.4% 92.3%
157818 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 30.0 3.30e-01 78.4% 70.3%
3994973 101.1.12.3 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.51 40.0 3.86e-01 85.6% 98.5%
3520216 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.51 29.0 3.46e-01 79.3% 88.4%
3211367 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 28.0 3.04e-01 79.3% 63.3%
D3 medium residues 94-126_139-166
PDB
Domain cluster: rep: glycoprotein__YP_009362193__Nkolbisson_virus__380442__D82-138
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00974.25 best Rhabdo_glycop_FD 43.1 8.60e-11 100.0% 68.4%
D4 medium residues 127-138_167-215
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00974.25 best Rhabdo_glycop_FD 27.8 5.00e-06 60.7% 27.6%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.53 38.0 3.97e-01 80.3% 87.0%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1503409 220.3.1.1 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop 0.90 85.0 6.38e-01 100.0% 68.9%
4878938 220.3.1.5 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop_FD, PH_Rhabdo_glycop 0.81 61.0 6.67e-01 88.5% 98.0%
4824866 220.3.1.6 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › PH_Rhabdo_glycop 0.78 64.0 6.49e-01 86.9% 91.5%
4832828 220.3.1.5 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop_FD, PH_Rhabdo_glycop 0.74 65.0 6.02e-01 98.4% 84.2%