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G

Euk-Vir

Jungle_carpet_python_virus

G__YP_009508482__Jungle_carpet_python_virus__2016401

Identity

Accession:
YP_009508482 ↗
Protein ID:
G
Kingdom:
euk

Quality

60.2 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Bornaviridae› Carbovirus› Jungle_carpet_python_virus

TaxID: 2016401

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 56-79_282-419
PDB
Domain cluster: rep: glycoprotein__YP_010085028__Wuhan_sharpbelly_bornavirus__2116489__D17-38_270-380
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06208.18 best BDV_G 193.5 7.50e-57 86.4% 27.1%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vhkA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.51 23.0 3.37e-01 95.1% 94.5%
4d6wA01 2.30.30.640 Mainly Beta › Roll › SH3 type barrels. › Rhabdovirus spike glycoprotein G, lateral domain 0.51 30.0 3.74e-01 82.7% 98.9%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3931130 4300.1.1.0 ↗ beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like 0.63 47.0 4.89e-01 87.0% 83.3%
3929658 4300.1.1.0 ↗ beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like 0.57 47.0 3.91e-01 87.7% 100.0%
D2 medium residues 88-99_218-264
PDB
Domain cluster: rep: glycoprotein__YP_009268897__Parrot_bornavirus_4__1548718__D54-64_188-232
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06208.18 best BDV_G 38.9 5.60e-10 96.6% 9.4%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5escA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 49.0 3.90e-01 78.0% 91.6%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.64 55.0 5.08e-01 100.0% 75.0%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 45.0 3.74e-01 78.0% 83.3%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 50.0 3.95e-01 98.3% 40.5%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 51.0 4.25e-01 96.6% 76.6%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.59 47.0 4.75e-01 100.0% 89.8%
4ecnA02 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.59 50.0 4.00e-01 100.0% 46.7%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 52.0 3.88e-01 98.3% 40.6%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.59 45.0 4.69e-01 98.3% 96.3%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 51.0 3.94e-01 100.0% 56.9%
6j0qA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.58 48.0 3.98e-01 100.0% 50.5%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.33e-01 100.0% 85.4%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.56 47.0 3.52e-01 100.0% 60.0%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.55 47.0 4.70e-01 98.3% 95.2%
3q39B02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.55 46.0 3.80e-01 100.0% 50.9%
4b3fX02 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 40.0 3.49e-01 98.3% 50.0%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.67e-01 100.0% 83.1%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.54 46.0 4.52e-01 98.3% 89.2%
4aqlA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.53 44.0 3.50e-01 96.6% 93.1%
1e0yA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.52 42.0 3.48e-01 100.0% 48.6%
1hskA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.52 40.0 3.15e-01 100.0% 39.4%
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.52 41.0 3.69e-01 100.0% 65.0%
1a5iA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 42.0 3.51e-01 98.3% 88.1%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.43e-01 100.0% 48.2%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.51 39.0 3.21e-01 86.4% 90.0%
1bteA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.50 37.0 3.34e-01 98.3% 54.3%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3666672 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 61.0 5.03e-01 100.0% 79.1%
3991097 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 60.0 4.75e-01 100.0% 77.6%
3358147 220.1.1.241 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EPL1 0.68 58.0 3.90e-01 100.0% 34.8%
3585551 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.68 56.0 5.34e-01 93.2% 100.0%
3656952 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 59.0 4.79e-01 100.0% 74.8%
4881914 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.68 48.0 3.37e-01 76.3% 37.8%
4931996 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.68 49.0 3.79e-01 78.0% 84.2%
4949945 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 49.0 3.85e-01 79.7% 93.1%
2575643 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.65 50.0 4.81e-01 100.0% 72.5%
3499381 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.62 50.0 2.95e-01 96.6% 13.3%
3260972 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 52.0 4.29e-01 100.0% 87.5%
3512614 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 52.0 4.31e-01 100.0% 73.0%
3484371 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.61 49.0 4.45e-01 96.6% 88.9%
3690350 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 51.0 4.22e-01 100.0% 96.7%
3475247 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.61 41.0 3.93e-01 100.0% 60.0%
2756510 4.1.1.131 ↗ beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.60 46.0 4.12e-01 98.3% 57.3%
3242544 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 52.0 4.09e-01 100.0% 69.2%
3276452 220.4.1.6 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › Peptidase_M8 0.59 47.0 2.85e-01 96.6% 12.1%
3563258 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.59 49.0 3.92e-01 100.0% 92.6%
3536943 712.1.1.0 ↗ beta sandwiches › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain 0.58 49.0 3.68e-01 96.6% 95.5%
4027872 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 4.19e-01 98.3% 84.2%
3785320 9.14.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.57 47.0 3.61e-01 100.0% 85.0%
3715847 375.1.1.184 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TOP3B 0.55 43.0 3.59e-01 88.1% 71.8%
139162 284.1.1.9 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N 0.55 47.0 4.73e-01 98.3% 96.7%
3607549 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 46.0 3.22e-01 100.0% 98.2%
3821922 4.1.1.299 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, KOW1_SPT5 0.55 47.0 3.73e-01 98.3% 92.0%
3668886 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.55 46.0 3.68e-01 100.0% 56.9%
3225056 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 3.83e-01 100.0% 84.5%
3624853 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 42.0 3.35e-01 100.0% 84.5%
5044437 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 40.0 3.34e-01 89.8% 80.0%
5057020 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 41.0 3.33e-01 98.3% 43.2%
3804919 207.1.1.37 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID 0.51 44.0 3.01e-01 100.0% 45.3%
D3 medium residues 102-213
PDB