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G

Euk-Vir

Taro_vein_chlorosis_virus

G__YP_224082__Taro_vein_chlorosis_virus__2908018

Identity

Accession:
YP_224082 ↗
Protein ID:
G
Kingdom:
euk

Quality

72.4 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Alphanucleorhabdovirus› Taro_vein_chlorosis_virus

TaxID: 2908018

Cluster

View cluster (5 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 369-461_473-500
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 23.0 3.50e-01 82.6% 88.9%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 32.0 3.43e-01 95.0% 59.4%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 24.0 3.09e-01 79.3% 69.2%
2gpiA00 3.30.160.140 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Shew3726-like 0.52 28.0 3.17e-01 86.8% 67.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4000403 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.67 24.0 3.63e-01 84.3% 76.0%
3627280 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.56 30.0 3.75e-01 82.6% 84.0%
3222419 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.54 29.0 3.55e-01 84.3% 82.7%
4948951 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 37.0 3.77e-01 86.0% 74.2%
3500033 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 20.0 3.23e-01 88.4% 92.0%
D2 medium residues 43-73_311-367
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pqaB01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.60 52.0 3.70e-01 96.6% 43.0%
3bt5A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 41.0 3.50e-01 75.0% 87.4%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 41.0 4.32e-01 93.2% 83.3%
1gzmA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 43.0 2.93e-01 80.7% 54.3%
1x31C01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.56 36.0 3.46e-01 96.6% 55.2%
6c1qB02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 39.0 2.84e-01 77.3% 90.7%
1h8mA00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.53 42.0 3.69e-01 87.5% 61.4%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 4.07e-01 97.7% 84.1%
3nrxA00 1.20.58.1520 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 42.0 3.79e-01 87.5% 61.8%
1xovA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 28.0 3.12e-01 93.2% 65.3%
3u4qA02 1.10.274.50 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.52 40.0 3.41e-01 83.0% 57.3%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.52 35.0 3.41e-01 95.5% 62.9%
2y1vA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.49e-01 94.3% 84.9%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.51 36.0 3.99e-01 95.5% 97.0%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.51 41.0 3.66e-01 87.5% 63.3%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.51 34.0 3.60e-01 95.5% 77.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3914286 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.68 48.0 3.68e-01 72.7% 47.7%
3617965 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.66 47.0 3.56e-01 72.7% 46.0%
3939833 605.4.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.64 47.0 4.54e-01 77.3% 86.0%
3996018 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.64 45.0 3.39e-01 73.9% 48.8%
4971610 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 34.0 2.96e-01 72.7% 35.4%
4355863 5001.1.1.64 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › PalH 0.61 53.0 3.68e-01 94.3% 77.9%
5048048 4957.1.1.9 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › HAAS 0.61 40.0 4.34e-01 86.4% 80.0%
4958430 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.60 44.0 3.20e-01 95.5% 28.3%
3978292 2484.1.1.251 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26691 0.58 44.0 2.87e-01 79.5% 43.4%
5002569 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.58 32.0 4.03e-01 93.2% 96.0%
3697589 223.1.1.94 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS-like 0.57 48.0 4.33e-01 92.0% 85.8%
988025 616.1.1.5 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › T6SS_Tsi2-like 0.55 38.0 4.10e-01 90.9% 84.2%
3505989 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.52 44.0 4.16e-01 93.2% 89.5%
4973579 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 41.0 3.11e-01 85.2% 82.5%
4943884 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 38.0 3.21e-01 86.4% 46.7%
D3 medium residues 74-92_223-310
PDB
Domain cluster: rep: glycoprotein__YP_006576505__Persimmon_virus_A__1211480__D58-82_211-281
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 46.0 4.39e-01 75.7% 92.7%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 46.0 4.81e-01 77.6% 87.0%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.62 44.0 4.61e-01 78.5% 82.1%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 46.0 4.56e-01 77.6% 91.1%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 45.0 4.21e-01 76.6% 74.3%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.62 51.0 5.09e-01 87.9% 97.3%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 44.0 4.23e-01 75.7% 65.3%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 40.0 4.15e-01 75.7% 70.6%
2p0hA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 4.38e-01 77.6% 86.4%
1droA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 44.0 4.23e-01 75.7% 86.1%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 4.26e-01 77.6% 80.8%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 44.0 4.03e-01 77.6% 81.4%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 4.00e-01 77.6% 67.9%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 39.0 4.10e-01 75.7% 77.1%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 41.0 4.15e-01 76.6% 81.5%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 3.93e-01 77.6% 71.2%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 30.0 3.44e-01 73.8% 70.9%
8b2gA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 31.0 3.91e-01 73.8% 100.0%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 42.0 3.54e-01 82.2% 81.7%
3s2cJ01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 29.0 2.70e-01 76.6% 37.9%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.92e-01 77.6% 82.8%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.53 38.0 3.75e-01 75.7% 80.3%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3700838 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.64 45.0 4.21e-01 75.7% 59.2%
3929135 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 47.0 4.75e-01 75.7% 81.0%
3234772 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 47.0 4.36e-01 75.7% 76.9%
3219682 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 45.0 4.21e-01 76.6% 85.2%
5053759 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 45.0 4.22e-01 75.7% 77.7%
3858569 220.1.1.34 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_9 0.62 45.0 4.03e-01 76.6% 72.0%
3743938 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 46.0 4.30e-01 77.6% 67.7%
3523446 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.60 45.0 4.62e-01 77.6% 88.0%
3250427 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 43.0 4.29e-01 73.8% 80.9%
3720028 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 44.0 4.36e-01 77.6% 85.2%
3922234 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 44.0 4.33e-01 77.6% 76.5%
3648024 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.60 44.0 4.21e-01 77.6% 72.0%
3937216 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.59 44.0 4.14e-01 77.6% 67.7%
3481680 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 43.0 4.25e-01 76.6% 78.3%
3266703 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 44.0 3.79e-01 77.6% 94.5%
3790351 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.59 44.0 4.25e-01 77.6% 75.0%
3499509 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 44.0 4.21e-01 77.6% 77.5%
3259514 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 43.0 4.18e-01 77.6% 74.2%
3742330 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.58 42.0 4.14e-01 77.6% 70.4%
3265019 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 42.0 4.36e-01 77.6% 81.6%
4953970 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 41.0 4.01e-01 75.7% 80.0%
3699577 220.1.1.236 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_27 0.56 42.0 4.17e-01 77.6% 79.1%
3800237 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.82e-01 76.6% 66.4%
3939412 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 38.0 4.02e-01 75.7% 87.4%
3995153 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 38.0 3.86e-01 76.6% 77.1%
4565886 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 38.0 3.54e-01 77.6% 80.4%
3417244 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.52 36.0 3.82e-01 75.7% 82.1%
3594856 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 37.0 3.75e-01 77.6% 75.5%
7414 219.1.1.36 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 0.50 35.0 3.00e-01 83.2% 42.9%
D4 medium residues 93-216
PDB
Domain cluster: rep: glycoprotein__YP_010086816__Wheat_yellow_striate_virus__2152660__D148-272