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G_protein

Euk-Vir

Lettuce_yellow_mottle_virus

G_protein__YP_002308375__Lettuce_yellow_mottle_virus__471285

Identity

Accession:: YP_002308375 ↗
Protein ID:: G_protein
Kingdom:: euk

Quality

70.5 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Alphacytorhabdovirus› Lettuce_yellow_mottle_virus

TaxID: 471285

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 77-196

PDB

Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196

D2 medium residues 26-64_283-436

PDB

Domain cluster: rep: glycoprotein__YP_010086793__Cabbage_cytorhabdovirus_1__2051550__D56-86_306-446

D3 medium residues 65-76_201-265

PDB

Domain cluster: rep: glycoprotein__YP_006576505__Persimmon_virus_A__1211480__D58-82_211-281

CATH (20)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4d6wA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.61	53.0	4.99e-01	100.0%	78.9%
1pwaA00	2.80.10.50	Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) ›	0.61	54.0	4.65e-01	100.0%	95.1%
7u32F02	2.30.30.10	Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral	0.61	38.0	4.46e-01	98.7%	96.1%
1ex4B02	2.30.30.10	Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral	0.58	35.0	3.83e-01	100.0%	78.0%
2yztA00	3.30.160.250	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.58	40.0	4.28e-01	72.7%	90.9%
2jn4A00	2.40.50.240	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NifT/FixU-like	0.58	39.0	4.18e-01	89.6%	81.8%
3h41A02	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.58	36.0	3.78e-01	97.4%	70.6%
2lydA00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.56	48.0	4.11e-01	100.0%	61.9%
2cudA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.55	38.0	3.80e-01	100.0%	69.6%
3npfA02	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.55	35.0	3.64e-01	98.7%	70.0%
6bioA01	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.55	36.0	3.97e-01	97.4%	89.5%
1uebA02	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.52	37.0	4.05e-01	74.0%	100.0%
2i0nA01	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.52	37.0	4.15e-01	97.4%	100.0%
1lckA01	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.52	36.0	3.99e-01	100.0%	93.2%
2do3A01	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.51	32.0	3.56e-01	100.0%	92.2%
1x6bA01	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.51	35.0	3.77e-01	100.0%	85.9%
3i35A00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.51	35.0	3.92e-01	98.7%	96.5%
6ghmC02	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.51	35.0	3.82e-01	96.1%	89.1%
2krsA01	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.50	34.0	3.66e-01	97.4%	90.0%
2ekhA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.50	35.0	3.49e-01	97.4%	70.0%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3931369	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.57	31.0	3.70e-01	97.4%	82.0%
4260807	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.55	34.0	3.53e-01	93.5%	67.1%
3923813	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.55	37.0	3.97e-01	98.7%	86.2%
5074404	375.1.4.1 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C	0.54	36.0	4.06e-01	93.5%	96.4%
4031670	4.1.1.58 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_3	0.53	35.0	3.82e-01	97.4%	88.3%
3514867	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.52	30.0	3.12e-01	98.7%	57.3%
3469800	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.52	36.0	3.59e-01	100.0%	68.8%
3479037	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.52	36.0	3.59e-01	100.0%	68.8%
158943	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.51	35.0	3.50e-01	100.0%	69.6%
3406803	4.1.1.54 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_2	0.51	35.0	3.67e-01	100.0%	78.6%
165657	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.51	35.0	3.70e-01	96.1%	82.1%
3788449	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.50	37.0	3.84e-01	100.0%	85.7%