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G_protein

Euk-Vir

Santa_barbara_virus

G_protein__YP_009176997__Santa_barbara_virus__1552661

Identity

Accession:: YP_009176997 ↗
Protein ID:: G_protein
Kingdom:: euk

Quality

67.8 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Arurhavirus› Santa_barbara_virus

TaxID: 1552661

Cluster

View cluster (70 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 134-262

PDB

Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00974.25 best	Rhabdo_glycop_FD	98.9	3.30e-28	77.5%	100.0%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3zoqC00	6.20.250.30	Special › Other non-globular › Double Stranded RNA Binding Domain ›	0.58	22.0	3.23e-01	100.0%	79.2%
1vwxS02	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.56	26.0	3.25e-01	100.0%	71.1%
4a18X01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.53	26.0	3.15e-01	100.0%	72.2%
2w5fB01	2.60.120.260	Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like	0.52	27.0	2.58e-01	91.5%	42.1%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1503409	220.3.1.1 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop	0.90	86.0	8.54e-01	99.2%	97.0%
5010503	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.68	34.0	3.91e-01	100.0%	64.2%
2530507	220.3.1.3 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1	0.65	59.0	4.93e-01	100.0%	91.9%
1688016	220.3.1.3 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1	0.65	58.0	5.00e-01	100.0%	96.2%
2124211	220.3.1.2 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64	0.65	57.0	5.35e-01	97.7%	98.8%
2124201	220.3.1.2 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64	0.65	57.0	5.38e-01	97.7%	100.0%
185186	220.3.1.2 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64	0.64	57.0	5.35e-01	98.4%	99.4%
2464208	220.3.1.2 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64	0.63	56.0	5.24e-01	98.4%	98.8%
3508212	3115.1.1.6 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494	0.58	29.0	3.86e-01	97.7%	90.0%
3517068	3115.1.1.6 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494	0.54	27.0	3.48e-01	99.2%	90.8%
3892842	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.53	27.0	3.51e-01	100.0%	92.3%
3280008	3115.1.1.2 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288	0.51	33.0	3.87e-01	86.0%	94.4%

D2 high residues 265-364

PDB

Domain cluster: rep: glycoprotein__YP_009666837__Vaprio_virus__2100727__D224-297

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4d6wA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.69	56.0	5.81e-01	92.0%	90.5%
2cmzA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.66	53.0	5.47e-01	92.0%	90.3%
2rovA00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.54	43.0	4.12e-01	86.0%	92.3%
1z87A01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.52	41.0	4.15e-01	87.0%	88.0%
3w1hA01	3.90.1150.110	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 ›	0.50	40.0	3.27e-01	96.0%	45.5%
7sxqA01	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.50	42.0	3.23e-01	94.0%	83.5%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3612244	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.65	52.0	4.84e-01	86.0%	79.2%
3709115	220.1.1.175 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_31	0.62	52.0	4.12e-01	94.0%	73.9%
3705552	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.62	49.0	4.23e-01	87.0%	88.5%
3595953	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.60	46.0	3.83e-01	84.0%	68.6%
3902169	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.58	44.0	4.18e-01	83.0%	76.0%
3701275	220.1.1.1 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH	0.55	44.0	4.02e-01	89.0%	89.3%
3253036	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.55	44.0	4.01e-01	87.0%	72.6%
3220217	220.1.1.159 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_met_RdRP	0.55	44.0	3.77e-01	88.0%	83.6%
3571958	220.1.1.50 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17	0.54	41.0	3.98e-01	86.0%	72.2%
3564421	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.53	37.0	3.54e-01	71.0%	73.9%
3171382	220.1.1.86 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N	0.51	35.0	3.68e-01	78.0%	77.8%
4145584	3016.1.1.11 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SelA	0.50	40.0	3.97e-01	96.0%	81.0%

D3 medium residues 82-128_365-448_487-506

PDB

Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24833.2 best	Rhabdo_glycop_CD	54.9	1.40e-14	76.2%	86.8%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3fn5B00	2.40.260.10	Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase	0.51	28.0	2.80e-01	99.3%	47.2%
1repC02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	28.0	3.43e-01	75.5%	85.7%
3c30A02	2.20.20.100	Mainly Beta › Single Sheet › Anthopleurin-A › LuxQ periplasmic domain, C-terminal subdomain	0.50	23.0	3.31e-01	71.5%	100.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4471802	325.1.7.0 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif	0.55	26.0	3.26e-01	95.4%	73.3%

D4 medium residues 507-578

PDB