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G_protein

Euk-Vir

Tomato_yellow_mottle-associated_virus

G_protein__YP_009352238__Tomato_yellow_mottle-associated_virus__1967841

Identity

Accession:
YP_009352238 ↗
Protein ID:
G_protein
Kingdom:
euk

Quality

71.0 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Alphacytorhabdovirus› Tomato_yellow_mottle-associated_virus

TaxID: 1967841

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-60_312-454
PDB
Domain cluster: rep: glycoprotein__YP_010086793__Cabbage_cytorhabdovirus_1__2051550__D56-86_306-446
D2 high residues 85-203
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
D3 medium residues 68-82_212-275
PDB
Domain cluster: rep: glycoprotein__YP_006576505__Persimmon_virus_A__1211480__D58-82_211-281
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.73 64.0 5.58e-01 98.7% 87.6%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.70 62.0 5.59e-01 98.7% 91.8%
5cq2A02 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.69 33.0 4.31e-01 84.8% 83.7%
2mdiA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.69 34.0 4.02e-01 89.9% 67.9%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.68 59.0 5.32e-01 98.7% 92.7%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.67 29.0 4.02e-01 92.4% 90.9%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.65 35.0 3.64e-01 74.7% 56.0%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.64 42.0 4.10e-01 91.1% 60.2%
2yshA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.63 29.0 3.84e-01 91.1% 97.0%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 34.0 4.15e-01 94.9% 89.1%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.62 37.0 4.28e-01 100.0% 88.5%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 35.0 3.93e-01 97.5% 75.0%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.59 51.0 4.17e-01 98.7% 84.5%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 41.0 4.47e-01 75.9% 89.4%
4govA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 50.0 4.32e-01 98.7% 96.2%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.57 32.0 3.68e-01 100.0% 75.4%
3wa1A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 49.0 4.01e-01 100.0% 97.5%
8badA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 50.0 4.14e-01 100.0% 99.3%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 34.0 4.11e-01 97.5% 100.0%
5bxrA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 43.0 3.61e-01 83.5% 88.7%
3v9fA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.81e-01 88.6% 26.7%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.51 32.0 3.69e-01 83.5% 90.9%
5abxA00 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.51 34.0 2.67e-01 100.0% 31.2%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 34.0 3.72e-01 98.7% 85.9%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 4.01e-01 77.2% 100.0%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 35.0 3.88e-01 100.0% 96.6%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 35.0 3.90e-01 100.0% 100.0%
1sr4A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 42.0 3.45e-01 100.0% 86.2%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3568187 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.75 33.0 4.73e-01 96.2% 94.3%
3576110 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.74 33.0 3.09e-01 96.2% 34.7%
3992986 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.74 63.0 6.49e-01 100.0% 97.3%
3586791 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.72 31.0 4.49e-01 93.7% 91.4%
3885750 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.69 35.0 4.28e-01 72.2% 78.0%
3485486 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.68 34.0 4.07e-01 84.8% 70.9%
3574639 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.65 39.0 2.62e-01 94.9% 16.1%
5046375 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.65 45.0 4.52e-01 93.7% 71.2%
3867284 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 54.0 3.30e-01 98.7% 17.4%
3554209 6148.1.1.1 ↗ few secondary structure elements › N-terminal domain of EpCAM › N-terminal domain of EpCAM › N-terminal domain of EpCAM › EpCAM_N 0.62 32.0 4.18e-01 91.1% 95.0%
3696026 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 34.0 3.88e-01 72.2% 71.7%
3708854 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.60 35.0 4.27e-01 93.7% 94.0%
4238585 375.1.4.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C 0.60 39.0 4.65e-01 92.4% 100.0%
3732839 220.1.1.71 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Inp1 0.59 50.0 4.49e-01 100.0% 72.5%
3410137 4252.1.1.11 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF4464 0.59 41.0 3.59e-01 72.2% 96.6%
1396826 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.58 42.0 4.49e-01 75.9% 89.6%
3656952 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 4.37e-01 98.7% 69.6%
3478983 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 4.49e-01 100.0% 76.2%
3716426 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.57 49.0 4.09e-01 100.0% 82.1%
5079725 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 38.0 4.23e-01 89.9% 91.7%
3241890 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 40.0 3.80e-01 100.0% 61.0%
3466470 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 4.17e-01 100.0% 70.0%
3170688 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.56 36.0 3.95e-01 100.0% 86.7%
3701091 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 3.83e-01 98.7% 77.5%
3548416 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.55 47.0 4.17e-01 100.0% 78.3%
1933287 9.3.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › BT_2262-like_C 0.55 46.0 4.12e-01 98.7% 93.4%
3714156 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.65e-01 100.0% 67.1%
3168302 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 44.0 2.75e-01 89.9% 19.3%
3402045 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.54 46.0 4.24e-01 100.0% 82.9%
3672735 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.53 36.0 3.90e-01 100.0% 87.7%
3612587 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.52 37.0 4.10e-01 89.9% 100.0%
3315510 4.1.1.246 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.52 46.0 4.18e-01 100.0% 76.4%
3437523 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.52 36.0 3.76e-01 100.0% 82.9%
3265019 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 44.0 4.07e-01 97.5% 80.6%
3491784 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.51 43.0 3.86e-01 100.0% 76.0%
3930210 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.51 40.0 2.89e-01 87.3% 68.2%
3751173 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.50 41.0 4.17e-01 98.7% 98.7%