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G_protein

Euk-Vir

Ekpoma_virus_2

G_protein__YP_009505517__Ekpoma_virus_2__1987021

Identity

Accession:
YP_009505517 ↗
Protein ID:
G_protein
Kingdom:
euk

Quality

70.8 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Tibrovirus› Ekpoma_virus_2

TaxID: 1987021

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-42_350-496
PDB
D2 high residues 78-190
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00974.25 best Rhabdo_glycop_FD 88.3 6.70e-25 85.8% 91.8%
D3 medium residues 233-294
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.64 48.0 4.31e-01 95.2% 55.9%
1x31D00 3.30.2270.10 Alpha Beta › 2-Layer Sandwich › Folate-binding fold › Folate-binding superfamily 0.64 46.0 4.13e-01 79.0% 84.6%
4tvcA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.58 42.0 3.04e-01 79.0% 47.9%
1khiA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 43.0 4.12e-01 80.6% 70.8%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.56 47.0 3.83e-01 100.0% 71.9%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.54 37.0 3.54e-01 72.6% 83.1%
3klkA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.54 40.0 3.05e-01 82.3% 87.6%
3nkdA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.54 42.0 3.83e-01 87.1% 88.1%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 39.0 3.83e-01 91.9% 76.1%
6i18A04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 41.0 3.59e-01 95.2% 94.4%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.48e-01 100.0% 50.0%
4w8kA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.51 40.0 3.58e-01 87.1% 78.0%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.77e-01 91.9% 79.1%
1r8oB01 2.30.30.480 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.52e-01 74.2% 80.3%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 34.0 3.12e-01 71.0% 83.7%
2ljwA00 3.30.428.40 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 0.50 34.0 2.98e-01 72.6% 91.3%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 37.0 3.58e-01 93.5% 70.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3286579 2003.1.10.9 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Lant_dehydr_N 0.63 46.0 4.04e-01 79.0% 87.4%
3483499 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 45.0 4.27e-01 87.1% 69.3%
3865353 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.58 43.0 3.99e-01 85.5% 61.4%
4153553 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 36.0 4.01e-01 95.2% 88.9%
1772988 702.1.1.7 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_3 0.56 42.0 2.98e-01 80.6% 47.4%
3979962 9.1.1.69 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BigA_N 0.55 41.0 3.75e-01 80.6% 72.9%
4292319 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.54 43.0 2.60e-01 93.5% 68.0%
5078989 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 41.0 3.28e-01 85.5% 76.3%
4979236 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.54 41.0 3.59e-01 85.5% 93.0%
4110878 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 37.0 4.12e-01 74.2% 100.0%
5022892 220.1.1.82 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.52 38.0 4.00e-01 85.5% 90.9%
3703169 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.52 41.0 3.17e-01 93.5% 96.2%
3919221 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.51 40.0 3.91e-01 96.8% 77.3%
4669381 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.51 42.0 3.69e-01 96.8% 61.0%
4007747 3735.1.1.14 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell 0.51 40.0 2.23e-01 91.9% 35.2%
3385336 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.51 43.0 2.84e-01 100.0% 64.4%