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Gc-Gn_glycoprotein_precursor

Euk-Vir

Chrysanthemum_stem_necrosis_virus

Gc-Gn_glycoprotein_precursor__YP_009162646__Chrysanthemum_stem_necrosis_virus__83871

Identity

Accession:
YP_009162646 ↗
Protein ID:
Gc-Gn_glycoprotein_precursor
Kingdom:
euk

Quality

63.7 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Tospoviridae› Orthotospovirus› Chrysanthemum_stem_necrosis_virus

TaxID: 83871

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 464-551
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.65 36.0 3.81e-01 89.8% 59.3%
1vq8E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.63 37.0 3.93e-01 90.9% 64.6%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.62 36.0 3.67e-01 90.9% 58.3%
7qu9A01 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.56 41.0 2.61e-01 76.1% 89.4%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.42e-01 72.7% 95.1%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 37.0 4.01e-01 89.8% 85.1%
4am6A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 38.0 2.90e-01 75.0% 95.2%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 30.0 3.29e-01 71.6% 69.6%
2rbcA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 43.0 3.03e-01 94.3% 94.4%
1rwiA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 41.0 3.02e-01 88.6% 87.1%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 27.0 3.39e-01 84.1% 86.5%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 43.0 3.03e-01 94.3% 76.6%
8axiA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 39.0 2.65e-01 83.0% 42.7%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 34.0 3.54e-01 87.5% 75.9%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 27.0 3.40e-01 83.0% 93.6%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 38.0 2.73e-01 83.0% 39.7%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051764 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.64 36.0 3.01e-01 70.5% 31.0%
3736764 3711.1.1.0 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.60 42.0 3.41e-01 73.9% 59.4%
4964178 319.1.1.29 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › DUF7127 0.58 39.0 4.20e-01 92.0% 82.2%
3593635 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 39.0 3.60e-01 70.5% 84.5%
3818615 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 43.0 3.01e-01 84.1% 52.7%
3684918 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.56 31.0 3.49e-01 83.0% 69.2%
4959983 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 33.0 4.09e-01 71.6% 94.5%
3609378 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 39.0 3.83e-01 72.7% 92.6%
3928729 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.55 43.0 3.24e-01 83.0% 51.7%
3424086 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.55 39.0 3.14e-01 75.0% 45.1%
3212707 5.1.3.9 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF 0.55 43.0 3.20e-01 85.2% 73.0%
3931704 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.54 38.0 3.54e-01 72.7% 90.0%
5009939 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.59e-01 72.7% 84.8%
3493793 5.1.4.258 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.54 42.0 3.02e-01 83.0% 68.3%
3600914 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.54 42.0 2.79e-01 83.0% 40.8%
3801512 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.40e-01 72.7% 73.3%
3454355 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.54 41.0 2.85e-01 83.0% 54.6%
3448051 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 40.0 2.98e-01 83.0% 51.8%
3705156 5.1.3.149 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 0.53 40.0 2.65e-01 81.8% 34.4%
3929033 59.1.1.0 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.53 39.0 4.10e-01 97.7% 87.5%
3716791 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.53 40.0 2.82e-01 83.0% 35.9%
3228567 2484.1.1.162 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › F-box 0.53 44.0 3.84e-01 93.2% 85.7%
3742641 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.52 33.0 3.07e-01 79.5% 50.0%
3786078 109.4.1.1764 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 0.52 44.0 2.78e-01 94.3% 48.3%
3411942 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.52 36.0 3.21e-01 72.7% 67.7%
3596312 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.52 37.0 3.19e-01 72.7% 64.6%
3902541 319.1.1.5 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.52 36.0 3.71e-01 89.8% 76.5%
3618718 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 36.0 3.34e-01 72.7% 81.7%
3433333 5.1.5.137 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_At4g14310 0.52 39.0 2.88e-01 85.2% 95.1%
3480221 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.52 26.0 2.90e-01 70.5% 58.5%
3703426 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 39.0 2.75e-01 81.8% 38.4%
3484813 319.1.1.5 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.51 36.0 3.67e-01 87.5% 75.3%
2390755 319.1.1.5 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.51 35.0 3.57e-01 88.6% 72.7%
4021643 719.2.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.51 35.0 3.36e-01 72.7% 85.7%
3672926 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 38.0 2.93e-01 83.0% 49.8%
3885552 319.1.1.5 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.50 35.0 3.46e-01 88.6% 65.0%
D2 high residues 672-750_816-882
PDB
Domain cluster: rep: polyprotein__YP_009507882__Kairi_virus__80939__D1016-1096_1138-1232
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 35.5 5.20e-09 60.3% 7.9%
D3 high residues 925-1015
PDB
Domain cluster: rep: glycoprotein_precursor__YP_010086063__Alstroemeria_necrotic_streak_virus__693450__D943-1015
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 32.8 3.40e-08 85.7% 7.6%
D4 medium residues 610-670_769-815_883-919
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009362035__Kibale_virus__1406344__D349-405_490-561_609-646
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5x7qA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 30.0 3.24e-01 95.2% 54.3%
4kq7A01 2.60.120.1390 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 0.57 36.0 3.52e-01 97.2% 56.8%
8hhvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 29.0 3.17e-01 97.2% 56.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5056494 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.58 30.0 3.28e-01 95.2% 57.5%
3451430 10.32.1.199 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF642 0.57 28.0 3.36e-01 92.4% 68.4%
5013744 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.57 28.0 3.81e-01 89.7% 90.7%
3242086 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.56 33.0 3.09e-01 96.6% 46.3%
4101890 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.56 28.0 2.89e-01 97.2% 48.9%
5039646 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 30.0 3.22e-01 96.6% 60.0%
5053995 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 29.0 3.90e-01 93.1% 100.0%
4663567 207.6.1.12 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › Ice_nucleation 0.54 28.0 1.81e-01 93.8% 11.7%
4989577 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.53 27.0 2.99e-01 95.9% 55.8%
3214160 12.1.1.110 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › AMPK1_CBM 0.52 31.0 3.90e-01 92.4% 100.0%
3898502 12.5.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › FIIND 0.52 28.0 2.97e-01 97.2% 54.1%
4972680 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 30.0 3.54e-01 95.9% 88.4%