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GfV-B58-ORF1

Euk-Vir

Ichnoviriform_fumiferanae

GfV-B58-ORF1__YP_001029393__Ichnoviriform_fumiferanae__419435

Identity

Accession:
YP_001029393 ↗
Protein ID:
GfV-B58-ORF1
Kingdom:
euk

Quality

78.2 mean pLDDT

Taxonomy

Polydnaviriformidae› Ichnoviriform› Ichnoviriform_fumiferanae

TaxID: 419435

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-87
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p1jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.75 63.0 5.36e-01 100.0% 56.5%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.75 42.0 3.06e-01 100.0% 21.2%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.73 35.0 3.51e-01 100.0% 42.9%
1nnvA01 3.10.450.140 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative 0.69 35.0 3.31e-01 83.7% 40.0%
1j54A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.67 60.0 4.72e-01 100.0% 48.3%
2petA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 3.40e-01 76.7% 48.7%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.54 33.0 2.88e-01 93.0% 36.7%
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.53 38.0 3.55e-01 75.6% 87.9%
1vquB02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.52 42.0 3.10e-01 91.9% 87.5%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 34.0 3.01e-01 100.0% 44.9%
1akoA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.51 40.0 2.93e-01 88.4% 59.0%
6n36A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 41.0 2.94e-01 89.5% 29.8%
3hrdC02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.50 35.0 3.31e-01 74.4% 86.7%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1168767 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 42.0 3.10e-01 100.0% 22.9%
4486407 2484.1.1.36 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 0.74 41.0 3.08e-01 100.0% 23.6%
3088601 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.73 61.0 4.83e-01 100.0% 45.3%
5073666 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.73 46.0 2.99e-01 100.0% 16.4%
5069333 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.72 45.0 2.88e-01 100.0% 14.4%
3799955 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 62.0 4.36e-01 100.0% 35.5%
3250377 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.69 57.0 4.12e-01 100.0% 33.0%
3601137 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 55.0 4.19e-01 100.0% 38.5%
4102293 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.64 54.0 4.23e-01 100.0% 43.2%
3632169 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.63 55.0 4.07e-01 100.0% 36.7%
3934686 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 33.0 3.19e-01 100.0% 44.2%
4024811 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.62 50.0 3.45e-01 100.0% 26.4%
3316523 2484.1.1.36 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 0.61 47.0 3.35e-01 100.0% 28.6%
5018204 7520.1.1.0 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.59 39.0 3.19e-01 100.0% 35.8%
5029577 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 32.0 3.58e-01 94.2% 69.8%
4953226 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 29.0 3.32e-01 87.2% 63.1%
4958553 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.57 43.0 3.26e-01 100.0% 32.3%
4936587 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 51.0 3.52e-01 100.0% 47.1%
3493829 10.10.1.1 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.56 41.0 2.64e-01 79.1% 78.1%
3192419 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.53 37.0 2.75e-01 73.3% 64.3%
3844858 220.1.1.39 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZFYVE21_C 0.52 38.0 3.18e-01 100.0% 43.5%
3192115 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.51 40.0 2.53e-01 88.4% 37.6%
4012187 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.51 33.0 2.65e-01 83.7% 31.4%
4996250 247.1.1.30 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 0.50 38.0 2.69e-01 83.7% 52.1%