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GfV-B61-ORF1

Euk-Vir

Ichnoviriform_fumiferanae

GfV-B61-ORF1__YP_001029396__Ichnoviriform_fumiferanae__419435

Identity

Accession:
YP_001029396 ↗
Protein ID:
GfV-B61-ORF1
Kingdom:
euk

Quality

71.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 53-197
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00102.33 best Y_phosphatase 76.3 3.90e-21 100.0% 57.3%
D2 medium residues 198-265
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jjdF02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.86 72.0 4.70e-01 89.7% 23.7%
1yguA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.85 71.0 4.61e-01 89.7% 22.5%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.85 75.0 4.76e-01 95.6% 21.8%
3qcmA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.84 73.0 4.69e-01 94.1% 22.4%
3beyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.75 59.0 5.27e-01 100.0% 61.7%
3emuA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.72 59.0 4.64e-01 98.5% 42.4%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 47.0 4.88e-01 73.5% 98.4%
2do7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 5.31e-01 95.6% 93.8%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 4.98e-01 89.7% 77.1%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 5.29e-01 86.8% 100.0%
4jd9G00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.63 46.0 3.90e-01 79.4% 49.2%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.63 44.0 3.59e-01 73.5% 79.4%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 4.56e-01 85.3% 79.1%
1nrwA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.62 36.0 2.92e-01 94.1% 30.8%
3vouB00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 44.0 3.61e-01 100.0% 41.9%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 42.0 4.18e-01 75.0% 80.3%
2co9A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.57 39.0 3.51e-01 72.1% 68.6%
4nn1A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 48.0 3.48e-01 97.1% 52.7%
2nr4A02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.56 43.0 4.53e-01 88.2% 98.3%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.55 48.0 3.66e-01 94.1% 63.4%
4bw5C00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 45.0 3.18e-01 94.1% 29.2%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 43.0 4.47e-01 85.3% 92.1%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 45.0 3.99e-01 94.1% 87.3%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.53 45.0 4.23e-01 98.5% 80.2%
7qihA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 41.0 3.59e-01 82.4% 72.3%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 47.0 4.33e-01 100.0% 83.9%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.52 43.0 4.05e-01 94.1% 85.1%
3rbtA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 42.0 3.54e-01 91.2% 67.5%
1v4aA01 1.10.4050.10 Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE 0.51 41.0 3.58e-01 91.2% 56.0%
5djsA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 45.0 3.49e-01 95.6% 78.3%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 43.0 4.13e-01 95.6% 81.5%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 43.0 4.13e-01 100.0% 81.7%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3791570 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.89 79.0 4.93e-01 95.6% 20.6%
3490145 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.88 82.0 5.75e-01 100.0% 36.3%
3579667 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.88 77.0 6.01e-01 94.1% 48.1%
3923171 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.86 75.0 4.81e-01 95.6% 22.0%
3234110 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.85 74.0 5.26e-01 95.6% 33.8%
3991717 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.85 78.0 6.24e-01 98.5% 59.2%
3779022 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.85 76.0 4.92e-01 97.1% 23.9%
3575054 4230.1.1.7 alpha arrays › DnaD domain › DnaD domain › DnaD domain › Y_phosphatase 0.85 70.0 7.22e-01 89.7% 95.4%
3584992 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.84 71.0 4.83e-01 91.2% 28.0%
3505440 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.84 74.0 4.79e-01 95.6% 23.6%
3930110 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.84 74.0 4.68e-01 95.6% 21.3%
3580291 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.83 77.0 4.78e-01 100.0% 27.2%
3934999 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.83 72.0 4.62e-01 95.6% 21.7%
3923854 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.82 72.0 5.86e-01 95.6% 54.2%
3938060 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.81 72.0 5.21e-01 95.6% 37.1%
3996443 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.81 70.0 4.66e-01 94.1% 34.4%
3940848 4230.1.1.7 alpha arrays › DnaD domain › DnaD domain › DnaD domain › Y_phosphatase 0.80 71.0 5.71e-01 95.6% 52.0%
3505584 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.80 73.0 4.68e-01 100.0% 22.7%
3240027 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.80 68.0 4.55e-01 94.1% 25.5%
4927487 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.76 66.0 6.37e-01 94.1% 85.3%
4995680 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.73 60.0 6.28e-01 89.7% 100.0%
4993593 198.1.1.27 alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF27234 0.72 65.0 6.15e-01 100.0% 86.3%
3850992 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.71 57.0 4.34e-01 94.1% 37.5%
3515586 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.70 59.0 4.68e-01 94.1% 77.9%
3716703 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.69 55.0 5.43e-01 89.7% 85.3%
3738109 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.69 48.0 4.27e-01 72.1% 86.3%
3614685 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 49.0 5.34e-01 80.9% 94.5%
3597985 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 5.44e-01 94.1% 92.5%
3534466 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.67 55.0 5.61e-01 94.1% 100.0%
3225449 621.1.1.0 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.67 56.0 5.50e-01 98.5% 100.0%
3390249 4003.1.1.0 alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins 0.67 54.0 5.28e-01 92.6% 81.3%
3464617 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 5.49e-01 94.1% 100.0%
4006612 639.2.1.1 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB 0.66 46.0 4.32e-01 73.5% 70.6%
3858057 101.42.1.1 alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins › HTH_SUN2 0.66 52.0 5.09e-01 88.2% 80.0%
4126690 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.65 47.0 5.11e-01 77.9% 100.0%
1068638 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.65 49.0 5.29e-01 86.8% 100.0%
3428929 101.1.1.138 alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD 0.65 54.0 4.83e-01 95.6% 96.0%
3935995 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.64 50.0 4.95e-01 89.7% 84.0%
4978355 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 51.0 4.79e-01 88.2% 87.1%
3659966 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 49.0 3.49e-01 83.8% 32.5%
3726085 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.63 53.0 5.01e-01 98.5% 78.8%
4249392 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.63 50.0 4.19e-01 92.6% 55.5%
3281255 101.1.2.742 alpha arrays › HTH › HTH › winged helix domain › DUF7782 0.62 46.0 3.86e-01 86.8% 45.0%
3711005 1091.1.1.0 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.62 48.0 4.96e-01 91.2% 100.0%
3943035 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.62 48.0 4.97e-01 85.3% 100.0%
4948481 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.61 49.0 3.37e-01 91.2% 26.8%
3923558 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.60 41.0 2.96e-01 82.4% 25.9%
3176995 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.60 50.0 4.79e-01 98.5% 91.7%
4863395 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.60 42.0 4.09e-01 72.1% 91.8%
3353941 1134.1.1.7 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 0.59 49.0 4.99e-01 97.1% 95.4%
3274011 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 42.0 4.27e-01 82.4% 92.3%
3218544 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.57 42.0 4.11e-01 85.3% 81.2%
3781595 1134.1.1.7 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 0.56 48.0 4.79e-01 97.1% 92.9%
4993969 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 45.0 4.17e-01 86.8% 72.9%
3505115 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.55 44.0 3.73e-01 100.0% 49.2%
3274626 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 46.0 2.84e-01 100.0% 15.4%
3740089 1134.1.1.7 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 0.52 42.0 4.35e-01 95.6% 98.5%