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GfV-C21-ORF2
Euk-VirIchnoviriform_fumiferanae
GfV-C21-ORF2__YP_001029425__Ichnoviriform_fumiferanae__419435
Identity
- Accession:
- YP_001029425 ↗
- Protein ID:
- GfV-C21-ORF2
- Kingdom:
- euk
Quality
62.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 108-190
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08707.17 best | PriCT_2 | 28.1 | 3.10e-06 | 91.6% | 79.2% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pvlA03 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.66 | 57.0 | 5.15e-01 | 97.6% | 83.9% |
| 6z01B03 | 1.10.132.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.66 | 50.0 | 4.06e-01 | 80.7% | 83.1% |
| 1owlA03 | 1.10.579.10 | Mainly Alpha › Orthogonal Bundle › DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 › DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | 0.66 | 59.0 | 4.61e-01 | 100.0% | 76.7% |
| 3m1mA03 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.65 | 51.0 | 4.67e-01 | 85.5% | 85.5% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.64 | 50.0 | 4.99e-01 | 88.0% | 91.0% |
| 7c5yA02 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 43.0 | 3.54e-01 | 71.1% | 62.7% |
| 1f7uA02 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.62 | 45.0 | 3.94e-01 | 75.9% | 75.2% |
| 1hnnA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 51.0 | 3.71e-01 | 100.0% | 91.6% |
| 2prrA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.58 | 44.0 | 3.86e-01 | 80.7% | 79.5% |
| 1f5qB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 40.0 | 3.44e-01 | 74.7% | 79.7% |
| 3u4qB04 | 6.10.140.1030 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 40.0 | 4.38e-01 | 81.9% | 91.3% |
| 1sxjE03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.56 | 41.0 | 3.97e-01 | 80.7% | 89.7% |
| 1xg7A02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.55 | 38.0 | 3.24e-01 | 72.3% | 44.8% |
| 1aluA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.54 | 46.0 | 3.85e-01 | 97.6% | 87.9% |
| 4unfA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.54 | 37.0 | 3.36e-01 | 71.1% | 51.3% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 39.0 | 3.45e-01 | 78.3% | 72.9% |
| 3eoqB02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.53 | 44.0 | 3.48e-01 | 92.8% | 86.3% |
| 2etdA00 | 1.20.1440.20 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain | 0.53 | 41.0 | 3.47e-01 | 84.3% | 67.4% |
| 1twfB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.53 | 42.0 | 3.36e-01 | 89.2% | 80.2% |
| 1wbeA01 | 1.10.3520.10 | Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein | 0.52 | 39.0 | 3.20e-01 | 86.7% | 51.9% |
| 1jfaB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 38.0 | 2.60e-01 | 83.1% | 95.7% |
| 3kp9A01 | 1.20.1440.130 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain | 0.50 | 41.0 | 3.41e-01 | 94.0% | 71.6% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3726895 | 206.1.1.55 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL | 0.72 | 58.0 | 3.89e-01 | 88.0% | 56.2% |
| 5064030 | 182.1.3.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX | 0.72 | 64.0 | 6.13e-01 | 98.8% | 96.8% |
| 3217577 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.70 | 48.0 | 5.48e-01 | 74.7% | 98.3% |
| 3928087 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.65 | 44.0 | 4.70e-01 | 72.3% | 82.9% |
| 5060617 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.63 | 48.0 | 4.38e-01 | 84.3% | 68.7% |
| 5057633 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.63 | 50.0 | 4.49e-01 | 86.7% | 64.3% |
| 4433661 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.62 | 47.0 | 4.17e-01 | 83.1% | 65.6% |
| 3270686 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.60 | 41.0 | 4.20e-01 | 74.7% | 73.8% |
| 3692554 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 44.0 | 3.12e-01 | 80.7% | 27.0% |
| 3290358 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.59 | 41.0 | 3.62e-01 | 72.3% | 86.7% |
| 3382035 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 33.0 | 3.30e-01 | 100.0% | 51.1% |
| 3812703 | 3758.1.1.7 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › BPS1 | 0.58 | 39.0 | 2.93e-01 | 71.1% | 57.4% |
| 3750584 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.55 | 37.0 | 3.43e-01 | 73.5% | 50.4% |
| 3277954 | 2008.1.1.67 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C | 0.55 | 44.0 | 2.99e-01 | 88.0% | 51.4% |
| 3819613 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 32.0 | 3.19e-01 | 100.0% | 52.2% |
| 3939608 | 631.1.1.1 ↗ | alpha arrays › Glycolipid transfer protein, GLTP › Glycolipid transfer protein, GLTP › Glycolipid transfer protein, GLTP › GLTP | 0.55 | 42.0 | 3.23e-01 | 84.3% | 47.1% |
| 3594142 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 41.0 | 3.86e-01 | 84.3% | 89.5% |
| 3855699 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.53 | 43.0 | 3.48e-01 | 90.4% | 68.5% |
| 3539629 | 101.1.10.12 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Spy1 | 0.51 | 43.0 | 3.70e-01 | 95.2% | 77.8% |