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GfV-D2-ORF1
Euk-VirIchnoviriform_fumiferanae
GfV-D2-ORF1__YP_001029430__Ichnoviriform_fumiferanae__419435
Identity
- Accession:
- YP_001029430 ↗
- Protein ID:
- GfV-D2-ORF1
- Kingdom:
- euk
Quality
52.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 371-461
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bkbA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 31.0 | 3.58e-01 | 75.8% | 60.0% |
| 2z4hA02 | 2.40.50.540 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NlpE, C-terminal domain | 0.60 | 30.0 | 3.12e-01 | 75.8% | 48.8% |
| 3oymA01 | 1.10.340.70 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.60 | 36.0 | 3.65e-01 | 98.9% | 58.1% |
| 4rayA02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.59 | 30.0 | 3.91e-01 | 78.0% | 90.0% |
| 1nnwB00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.57 | 42.0 | 3.09e-01 | 76.9% | 95.6% |
| 2e9hA02 | 2.20.25.350 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.57 | 27.0 | 3.59e-01 | 73.6% | 90.9% |
| 2jn4A00 | 2.40.50.240 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NifT/FixU-like | 0.51 | 33.0 | 3.73e-01 | 80.2% | 89.4% |
| 1vq0A02 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.51 | 29.0 | 3.35e-01 | 92.3% | 84.2% |
| 4nnaA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 38.0 | 2.58e-01 | 78.0% | 97.0% |
| 7a0kA01 | 2.130.10.30 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II | 0.51 | 36.0 | 2.67e-01 | 74.7% | 96.2% |
| 6muwN00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 40.0 | 3.13e-01 | 89.0% | 92.4% |
| 3rm5B01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 39.0 | 2.79e-01 | 83.5% | 80.0% |
| 3m1cB01 | 3.30.390.170 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.50 | 35.0 | 3.34e-01 | 73.6% | 60.6% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3919221 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.63 | 31.0 | 3.38e-01 | 79.1% | 53.3% |
| 4032235 | 3264.1.1.0 ↗ | 0.60 | 45.0 | 3.70e-01 | 80.2% | 65.3% | |
| 3262364 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.57 | 36.0 | 3.41e-01 | 96.7% | 50.9% |
| 3905031 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.56 | 35.0 | 3.31e-01 | 97.8% | 48.7% |
| 4596531 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.54 | 31.0 | 3.43e-01 | 78.0% | 70.0% |
| 4224260 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 36.0 | 3.60e-01 | 100.0% | 65.3% |
| 3448806 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 33.0 | 3.83e-01 | 73.6% | 93.3% |
| 2491473 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 41.0 | 4.12e-01 | 81.3% | 98.9% |
| 5032233 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 37.0 | 3.47e-01 | 95.6% | 58.3% |
| 3924706 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.53 | 34.0 | 3.47e-01 | 96.7% | 66.7% |
| 4025781 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 29.0 | 3.38e-01 | 74.7% | 80.0% |
| 3756763 | 593.1.1.0 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like | 0.51 | 44.0 | 3.06e-01 | 96.7% | 70.2% |
| 3239485 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 44.0 | 3.93e-01 | 96.7% | 69.2% |
| 4946598 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 35.0 | 2.53e-01 | 73.6% | 88.3% |
| 1556781 | 3146.1.1.2 ↗ | a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_UL1 | 0.50 | 34.0 | 3.02e-01 | 70.3% | 47.7% |
D2
high
residues 503-690
Domain cluster:
rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
D3
medium
residues 191-300