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Glycoprotein_precursor

Euk-Vir

Cacao_virus

Glycoprotein_precursor__YP_010086097__Cacao_virus__629730

Identity

Accession:: YP_010086097 ↗
Protein ID:: Glycoprotein_precursor
Kingdom:: euk

Quality

73.3 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Phenuiviridae› Phlebovirus› Cacao_virus

TaxID: 629730

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-129

PDB

D2 high residues 1140-1224

PDB

Domain cluster: rep: glycoprotein_precursor__YP_009666331__Mukawa_virus__1569922__D875-994

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19019.7 best	Phlebo_G2_C	112.9	1.90e-32	100.0%	49.1%

D3 medium residues 260-416

PDB

Domain cluster: rep: Glycoproteins_G1_and_G2_precursor__YP_089671__Sandfly_fever_Naples_virus__206160__D318-463

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07243.17 best	Phlebovirus_G1	166.2	1.40e-48	100.0%	29.1%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2324038	1187.1.1.1 ↗	beta complex topology › Phlebovirus glycoprotein Gn › Phlebovirus glycoprotein Gn › Phlebovirus glycoprotein Gn › Phlebovirus_G1	0.92	89.0	6.80e-01	100.0%	49.7%
4900875	1187.1.1.1 ↗	beta complex topology › Phlebovirus glycoprotein Gn › Phlebovirus glycoprotein Gn › Phlebovirus glycoprotein Gn › Phlebovirus_G1	0.92	89.0	7.25e-01	100.0%	60.8%
3511031	394.1.1.1 ↗	few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14	0.59	24.0	3.74e-01	77.1%	96.7%
3404114	394.1.1.1 ↗	few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14	0.56	22.0	3.42e-01	75.8%	96.4%
3936153	2498.1.1.39 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like	0.54	28.0	2.94e-01	87.9%	51.3%
4129152	394.1.1.3 ↗	few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › DUF5401	0.54	21.0	3.31e-01	74.5%	96.4%
3627832	394.1.1.0 ↗	few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins	0.53	32.0	3.96e-01	86.6%	96.8%
1214684	211.1.1.1 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase	0.52	22.0	3.21e-01	84.7%	93.3%

D4 medium residues 577-639

PDB

Domain cluster: rep: glycoprotein_precursor__YP_009304994__Wenzhou_Shrimp_Virus_1__1608095__D240-325

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07243.17 best	Phlebovirus_G1	90.1	1.60e-25	100.0%	11.8%

D5 medium residues 640-690

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07243.17 best	Phlebovirus_G1	67.9	8.60e-19	100.0%	9.5%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7w42B01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.58	38.0	2.72e-01	74.5%	19.5%
1b35B00	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.58	40.0	2.62e-01	72.5%	54.1%

D6 medium residues 960-981_1031-1092

PDB

Domain cluster: representative

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1839942	5090.1.1.5 ↗	beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2	0.88	84.0	5.37e-01	100.0%	39.3%
2772148	5090.1.1.5 ↗	beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2	0.74	66.0	4.38e-01	100.0%	39.9%