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Glycoprotein_precursor

Euk-Vir

Caimito_virus

Glycoprotein_precursor__YP_010086209__Caimito_virus__2572766

Identity

Accession:
YP_010086209 ↗
Protein ID:
Glycoprotein_precursor
Kingdom:
euk

Quality

70.9 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Peribunyaviridae› Pacuvirus› Caimito_virus

TaxID: 2572766

Cluster

View cluster (42 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 844-916
PDB
Domain cluster: rep: polyprotein__YP_008400137__Brazoran_virus__1368616__D843-910
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 32.6 4.10e-08 100.0% 7.8%
D2 medium residues 29-112
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03563.19 best Bunya_G2 57.9 1.40e-15 100.0% 28.5%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5d79A03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.58 48.0 3.75e-01 91.7% 50.3%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 4.31e-01 92.9% 76.1%
2wqlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 47.0 3.90e-01 90.5% 92.8%
1tw0A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 48.0 3.90e-01 91.7% 90.4%
4xrtA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 46.0 3.93e-01 90.5% 92.3%
5e4bA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 45.0 3.65e-01 90.5% 84.7%
3rt0C00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 46.0 3.68e-01 90.5% 80.2%
4gafB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 4.22e-01 90.5% 71.8%
3otlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 46.0 3.79e-01 90.5% 89.5%
4q9cA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 4.13e-01 91.7% 70.5%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.55 45.0 4.21e-01 94.0% 71.7%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 45.0 3.79e-01 90.5% 93.8%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.55 45.0 3.52e-01 90.5% 77.7%
4dkmA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.54 44.0 3.36e-01 90.5% 93.9%
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 35.0 3.47e-01 89.3% 60.7%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.53 43.0 4.43e-01 90.5% 96.2%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.54e-01 90.5% 81.3%
3o4oB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.95e-01 92.9% 74.3%
1vzyA01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.52 42.0 3.14e-01 92.9% 50.9%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.50e-01 90.5% 91.4%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 36.0 3.57e-01 90.5% 68.5%
4ncbA01 3.30.530.60 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.51 40.0 3.39e-01 85.7% 76.7%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.77e-01 92.9% 72.1%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3634501 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.62 51.0 3.89e-01 90.5% 81.0%
3781076 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.61 50.0 3.86e-01 90.5% 83.1%
4015179 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.61 50.0 4.15e-01 89.3% 69.0%
3660463 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.60 50.0 3.94e-01 90.5% 89.7%
2142144 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.60 50.0 3.78e-01 90.5% 80.0%
3622962 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.60 49.0 3.51e-01 90.5% 67.5%
3937238 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.60 49.0 3.68e-01 91.7% 79.5%
3636447 2484.1.1.39 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Fumble 0.59 50.0 3.22e-01 92.9% 85.2%
3282030 331.3.1.23 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF5914 0.59 49.0 3.89e-01 91.7% 87.4%
3412367 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.59 48.0 3.79e-01 90.5% 86.7%
3175912 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.58 48.0 3.67e-01 90.5% 79.0%
3336175 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.58 47.0 3.64e-01 89.3% 72.6%
3273410 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.58 47.0 3.71e-01 90.5% 88.1%
3622225 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 44.0 4.51e-01 95.2% 87.5%
3619070 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.57 47.0 3.80e-01 90.5% 83.6%
3639154 331.4.1.27 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › VASt 0.57 47.0 3.57e-01 90.5% 63.4%
3250567 331.18.1.4 ↗ a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.57 48.0 3.75e-01 90.5% 51.4%
3437556 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.57 47.0 3.70e-01 91.7% 83.7%
3782223 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.57 47.0 3.52e-01 91.7% 68.0%
3255874 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.57 47.0 3.63e-01 90.5% 79.5%
3967686 331.3.1.52 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF28469 0.57 47.0 3.86e-01 90.5% 92.9%
5053461 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.57 47.0 3.69e-01 90.5% 77.1%
4221575 4099.1.1.52 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › FTA2 0.56 43.0 4.08e-01 84.5% 99.0%
3242625 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.56 45.0 4.18e-01 90.5% 80.0%
4596504 331.10.2.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.56 45.0 3.47e-01 88.1% 58.4%
3693958 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.56 48.0 3.55e-01 97.6% 87.0%
3689053 2484.1.1.39 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Fumble 0.55 45.0 3.70e-01 88.1% 82.0%
3284176 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.55 45.0 4.06e-01 91.7% 91.7%
3587042 331.3.1.32 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3284 0.55 43.0 3.76e-01 88.1% 95.6%
4963976 331.6.1.1 ↗ a+b two layers › TBP-like › MoaD-related protein, C-terminal domain › MoaD-related protein, C-terminal domain › DUF1952 0.54 44.0 4.54e-01 89.3% 96.2%
6344 331.6.1.1 ↗ a+b two layers › TBP-like › MoaD-related protein, C-terminal domain › MoaD-related protein, C-terminal domain › DUF1952 0.53 44.0 4.52e-01 91.7% 100.0%
3789597 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 32.0 3.16e-01 100.0% 53.7%
3899230 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 32.0 3.08e-01 100.0% 51.0%
3211116 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.52 40.0 3.12e-01 86.9% 71.2%
3926728 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.51 41.0 3.92e-01 89.3% 85.0%
3961836 11.1.1.214 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N 0.51 42.0 4.00e-01 100.0% 78.0%
3928828 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.51 39.0 3.12e-01 84.5% 72.8%
3475901 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 31.0 3.07e-01 100.0% 55.6%
D3 medium residues 116-198
PDB
Domain cluster: rep: polyprotein__YP_009667022__Witwatersrand_virus__1678231__D115-177
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03563.19 best Bunya_G2 103.9 1.30e-29 100.0% 29.2%
D4 medium residues 202-332
PDB
D5 medium residues 489-583
PDB
D6 medium residues 584-717
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009666932__Rio_Preto_da_Eva_virus__1538455__D599-707
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 27.2 1.70e-06 98.5% 13.5%
D7 medium residues 737-835
PDB
Domain cluster: rep: polyprotein__YP_009117085__Maprik_virus__1590836__D700-782
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.53 34.0 3.93e-01 96.0% 95.5%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 45.0 3.51e-01 100.0% 67.6%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4006143 3943.1.1.5 ↗ beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › WZC_N 0.53 34.0 3.45e-01 82.8% 66.3%
3551142 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.51 34.0 2.99e-01 86.9% 46.2%
D8 medium residues 1035-1104_1179-1217
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009551599__Avalon_virus__1810950__D843-903_1047-1069
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 101.2 7.50e-29 67.9% 8.4%
PF03557.22 Bunya_G1 52.9 2.90e-14 36.7% 4.5%