←Back to structures

Gn_Gc

Euk-Vir

Melon_severe_mosaic_tospovirus

Gn_Gc__YP_009346016__Melon_severe_mosaic_tospovirus__485724

Identity

Accession:
YP_009346016 ↗
Protein ID:
Gn_Gc
Kingdom:
euk

Quality

61.9 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Tospoviridae› Orthotospovirus› melon_severe_mosaic_virus

TaxID: 485724

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 611-666_749-791_897-905
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009505328__Badu_phasivirus__1980609__D739-805_894-940_1051-1072
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rerA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.83 73.0 6.88e-01 91.7% 92.9%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 32.0 4.23e-01 72.2% 98.3%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 34.0 4.19e-01 80.6% 96.8%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 35.0 4.27e-01 82.4% 100.0%
4ffuB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 42.0 3.74e-01 75.0% 97.3%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 35.0 4.22e-01 96.3% 98.5%
4kq7A02 2.60.120.1390 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 0.57 44.0 3.57e-01 100.0% 42.7%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.57 43.0 4.17e-01 79.6% 80.0%
1mveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.50e-01 100.0% 38.8%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 42.0 3.19e-01 79.6% 61.9%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.55 42.0 4.14e-01 78.7% 83.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 32.0 3.82e-01 78.7% 86.1%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.55 46.0 4.43e-01 92.6% 88.8%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 42.0 3.11e-01 81.5% 53.3%
1lshA04 2.20.80.10 Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex, chain A, domain 4 › Lipovitellin-phosvitin complex, chain A, domain 4 0.54 40.0 3.01e-01 76.9% 57.8%
2pliA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.54 38.0 4.16e-01 99.1% 94.0%
1ye9A02 2.40.470.10 Mainly Beta › Beta Barrel › catalase hpii fold › catalase hpii domain 0.53 39.0 3.88e-01 75.9% 94.6%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 41.0 3.01e-01 80.6% 53.8%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.53 43.0 4.11e-01 90.7% 96.9%
3jtyB01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.53 41.0 2.85e-01 83.3% 37.5%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.52 44.0 3.78e-01 93.5% 92.6%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.83e-01 88.9% 65.7%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 39.0 2.91e-01 80.6% 64.0%
5svgC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 43.0 4.21e-01 92.6% 92.6%
4qhzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 44.0 3.51e-01 98.1% 54.0%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 38.0 2.89e-01 80.6% 53.9%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.50 39.0 3.28e-01 84.3% 75.9%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3056811 5090.1.1.2 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Hanta_Gc_N 0.72 65.0 4.63e-01 100.0% 93.4%
5008209 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 50.0 5.63e-01 85.2% 98.8%
5014673 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 48.0 5.43e-01 86.1% 95.0%
5028250 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.67 58.0 5.88e-01 100.0% 96.2%
4563194 274.1.1.40 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › 17kDa_Anti_2 0.63 46.0 4.88e-01 86.1% 86.2%
3281520 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.62 43.0 3.47e-01 71.3% 67.0%
4992083 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 47.0 4.46e-01 79.6% 91.2%
3599172 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 35.0 4.40e-01 80.6% 95.4%
4146937 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 35.0 4.34e-01 83.3% 95.4%
3792117 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 31.0 3.89e-01 70.4% 81.8%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 35.0 4.29e-01 83.3% 95.4%
4037383 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 35.0 4.41e-01 81.5% 98.5%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 35.0 4.31e-01 85.2% 98.5%
5055689 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 35.0 4.02e-01 71.3% 84.0%
4419948 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 36.0 4.32e-01 92.6% 100.0%
4041586 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 34.0 4.14e-01 80.6% 95.4%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 34.0 4.13e-01 80.6% 95.4%
5002153 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 42.0 4.42e-01 76.9% 91.0%
4101580 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 34.0 4.07e-01 80.6% 95.4%
861 9.3.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.58 45.0 4.24e-01 82.4% 91.4%
142633 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.57 35.0 4.22e-01 96.3% 98.5%
4104219 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.57 33.0 4.03e-01 80.6% 95.4%
4646632 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.57 34.0 4.04e-01 81.5% 96.9%
4135259 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.56 33.0 4.06e-01 83.3% 96.9%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.56 34.0 4.07e-01 82.4% 98.5%
4038269 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.55 33.0 4.03e-01 82.4% 98.5%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.55 33.0 4.02e-01 83.3% 100.0%
3569021 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.54 46.0 3.81e-01 91.7% 84.3%
4083856 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 48.0 3.17e-01 100.0% 34.5%
3742201 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.52 40.0 3.78e-01 83.3% 76.3%
3957467 222.1.1.7 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FcoT 0.52 43.0 3.65e-01 88.9% 94.4%
3789174 11.2.1.17 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 0.52 44.0 4.13e-01 92.6% 77.7%
4381748 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.51 45.0 3.65e-01 100.0% 87.4%
3972133 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 43.0 3.37e-01 94.4% 93.3%
5045702 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 43.0 3.33e-01 94.4% 94.8%
D2 medium residues 107-211
PDB
D3 medium residues 513-592
PDB
D4 medium residues 667-731_832-864
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009551599__Avalon_virus__1810950__D843-903_1047-1069
D5 medium residues 732-748_792-831_865-887
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yugA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 39.0 3.18e-01 70.0% 63.9%
2db5A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 39.0 3.45e-01 86.3% 63.3%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3389864 5.1.4.281 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Hyd_WA, Tectonin 0.51 44.0 2.96e-01 95.0% 63.5%
D6 medium residues 920-1010
PDB
Domain cluster: rep: glycoprotein_precursor__YP_010086063__Alstroemeria_necrotic_streak_virus__693450__D943-1015
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 34.4 1.10e-08 97.8% 7.6%