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GrBNV_gp35-like_protein

Euk-Vir

Oryctes_rhinoceros_nudivirus

GrBNV_gp35-like_protein__YP_002321429__Oryctes_rhinoceros_nudivirus__92521

Identity

Accession:
YP_002321429 ↗
Protein ID:
GrBNV_gp35-like_protein
Kingdom:
euk

Quality

72.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-94
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 34.0 3.67e-01 78.9% 54.7%
3b42A00 3.30.450.290 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 42.0 3.77e-01 71.1% 86.5%
3t4lA02 3.30.450.350 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › CHASE domain 0.60 41.0 3.14e-01 71.1% 61.5%
1yq2A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.60 48.0 3.40e-01 90.0% 86.0%
1ju2A02 3.30.410.40 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › 0.59 49.0 3.90e-01 90.0% 55.2%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 47.0 4.03e-01 86.7% 95.1%
1lk5A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 44.0 4.70e-01 88.9% 93.7%
1kdgA02 3.30.410.10 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › Cholesterol Oxidase; domain 2 0.58 53.0 4.03e-01 100.0% 84.8%
3qdkA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 41.0 2.99e-01 75.6% 83.4%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 37.0 3.46e-01 70.0% 75.4%
1f46B00 3.30.1400.10 Alpha Beta › 2-Layer Sandwich › Cell Division Protein Zipa; Chain: A, › ZipA, C-terminal FtsZ-binding domain 0.54 42.0 3.72e-01 87.8% 77.9%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 32.0 3.27e-01 73.3% 60.2%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.53 37.0 3.11e-01 73.3% 87.8%
4a4aA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 43.0 3.80e-01 88.9% 72.6%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.53 42.0 4.39e-01 86.7% 98.8%
1jkmA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 47.0 3.13e-01 97.8% 79.1%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.53 36.0 3.42e-01 83.3% 58.0%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.78e-01 87.8% 73.1%
3c0tA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.52 41.0 3.27e-01 87.8% 97.5%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.51 28.0 3.47e-01 78.9% 97.9%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.51 37.0 2.89e-01 91.1% 31.4%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 44.0 2.88e-01 94.4% 57.2%
8es5A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 40.0 3.49e-01 86.7% 89.9%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 44.0 3.65e-01 98.9% 83.5%
2bvfA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.50 43.0 3.38e-01 100.0% 81.9%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4380266 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 47.0 3.48e-01 73.3% 59.1%
4988329 223.1.1.20 a+b three layers › Profilin-like › sensor domains › sensor domains › DUF3365 0.65 46.0 3.58e-01 73.3% 57.9%
3641389 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 44.0 2.85e-01 73.3% 40.2%
3672422 223.1.1.8 a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE 0.63 43.0 3.09e-01 72.2% 67.4%
6693 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.62 50.0 4.00e-01 88.9% 84.0%
339219 223.1.1.46 a+b three layers › Profilin-like › sensor domains › sensor domains › Mcp40H-20_sensor 0.61 43.0 3.78e-01 72.2% 87.6%
3985763 223.1.1.35 a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.61 44.0 3.33e-01 74.4% 62.0%
4673949 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 44.0 3.30e-01 74.4% 60.5%
167638 223.1.1.46 a+b three layers › Profilin-like › sensor domains › sensor domains › Mcp40H-20_sensor 0.60 41.0 3.71e-01 71.1% 89.3%
2772512 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 48.0 4.07e-01 87.8% 88.6%
3268156 223.2.1.4 a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.59 40.0 3.15e-01 70.0% 62.2%
4109774 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 48.0 3.95e-01 87.8% 88.1%
4965901 331.2.1.15 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › DUF7845 0.58 46.0 3.78e-01 87.8% 92.0%
3830120 244.1.1.9 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GMC_oxred_C 0.58 47.0 3.66e-01 90.0% 60.5%
3268309 223.1.1.8 a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE 0.57 39.0 2.76e-01 72.2% 56.1%
3282808 241.11.1.5 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › DUF5655 0.57 37.0 3.40e-01 91.1% 48.4%
3830647 868.1.1.5 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 0.57 45.0 3.59e-01 87.8% 96.9%
3301714 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.56 45.0 3.13e-01 90.0% 78.8%
4454427 220.1.1.9 beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.56 39.0 3.08e-01 73.3% 57.3%
3682179 223.2.1.4 a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.56 38.0 2.88e-01 70.0% 61.4%
3378914 331.3.1.43 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.55 45.0 3.35e-01 90.0% 91.7%
3787012 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.21e-01 74.4% 85.9%
3169357 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 43.0 4.06e-01 87.8% 93.6%
3922628 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 37.0 2.98e-01 71.1% 69.7%
3668259 605.1.1.273 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GAF 0.53 38.0 2.61e-01 75.6% 45.5%
3489971 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 38.0 3.44e-01 74.4% 80.0%
5025945 304.165.1.0 a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 0.53 43.0 3.67e-01 91.1% 90.8%
1280917 868.1.1.5 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 0.52 41.0 3.27e-01 87.8% 97.5%
4182020 223.2.1.32 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.51 43.0 3.33e-01 91.1% 71.6%
3258377 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.51 39.0 3.92e-01 82.2% 98.9%
3461740 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.50 39.0 3.89e-01 86.7% 99.0%
3251340 7579.1.1.93 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Abhydro_lipase 0.50 42.0 2.79e-01 95.6% 88.4%
5044384 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.50 34.0 3.47e-01 87.8% 72.9%
D2 high residues 175-190_204-255
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4uriA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.71 41.0 4.39e-01 97.1% 66.1%
3fcdB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.67 44.0 3.67e-01 97.1% 38.7%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.65 37.0 3.53e-01 88.2% 46.8%
3vb0A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 45.0 3.72e-01 100.0% 41.1%
3m2oA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.62 42.0 4.62e-01 97.1% 90.6%
4rt5A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 41.0 3.64e-01 100.0% 47.5%
4mymA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 41.0 3.24e-01 100.0% 31.8%
3isxA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.60 49.0 3.33e-01 89.7% 41.5%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 50.0 4.11e-01 98.5% 65.7%
3f0zA01 3.30.310.260 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.59 38.0 3.23e-01 95.6% 40.2%
3alfA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 41.0 4.10e-01 97.1% 71.4%
2qc5A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 47.0 3.05e-01 88.2% 98.7%
4r5zA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 41.0 3.45e-01 76.5% 67.5%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 48.0 3.44e-01 100.0% 86.0%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 44.0 2.76e-01 85.3% 100.0%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 46.0 2.97e-01 89.7% 99.0%
1owqA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 39.0 3.95e-01 97.1% 73.5%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.55 43.0 3.66e-01 86.8% 69.6%
4y6iA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 39.0 3.49e-01 77.9% 72.8%
1twuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 47.0 3.80e-01 100.0% 81.8%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.54 40.0 3.24e-01 82.4% 88.7%
1yw4B00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 44.0 2.91e-01 92.6% 53.1%
2phcB01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.53 39.0 3.68e-01 79.4% 84.3%
1r9cA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 45.0 3.78e-01 100.0% 86.4%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.53 41.0 3.56e-01 86.8% 97.3%
6p2uA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.51 34.0 3.58e-01 92.6% 88.5%
2ckwA03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.51 37.0 3.21e-01 79.4% 63.8%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.51e-01 88.2% 74.1%
4euuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 39.0 3.70e-01 89.7% 85.4%
3r4qA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 41.0 3.48e-01 100.0% 88.6%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.38e-01 86.8% 81.1%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.50 40.0 3.49e-01 91.2% 99.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5065544 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.78 56.0 4.11e-01 100.0% 30.9%
4112791 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.62 34.0 3.79e-01 92.6% 70.0%
4278911 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.60 33.0 3.68e-01 92.6% 70.0%
3209839 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.57 42.0 3.73e-01 98.5% 54.0%
5009701 328.5.1.0 a+b two layers › IF3-like › SirA-like › SirA-like 0.57 46.0 4.64e-01 89.7% 100.0%
4489484 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.56 46.0 2.87e-01 95.6% 37.0%
5078601 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.56 41.0 3.54e-01 79.4% 70.4%
4006693 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.55 44.0 4.17e-01 92.6% 92.9%
4554582 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.54 41.0 3.89e-01 88.2% 92.2%
4125300 3018.1.1.0 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.53 41.0 3.85e-01 88.2% 87.8%
4287928 3018.1.1.0 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.53 41.0 3.84e-01 88.2% 91.1%
3455348 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.53 40.0 3.64e-01 85.3% 81.0%
4566842 3018.1.1.0 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.52 40.0 3.72e-01 88.2% 87.8%
3601552 9.1.1.4 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.52 40.0 3.49e-01 85.3% 93.6%
3264236 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.52 41.0 3.62e-01 86.8% 63.0%
3972260 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 40.0 3.44e-01 85.3% 92.7%
D3 medium residues 96-174_191-203
PDB