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GyrB-like_ATPase_domain_protein
Euk-VirNile_crocodilepox_virus
GyrB-like_ATPase_domain_protein__YP_784279__Nile_crocodilepox_virus__1285600
Identity
- Accession:
- YP_784279 ↗
- Protein ID:
- GyrB-like_ATPase_domain_protein
- Kingdom:
- euk
Quality
66.7
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Crocodylidpoxvirus›
Nile_crocodilepox_virus
TaxID: 1285600
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 319-433
Domain cluster:
rep: CAKLQF020000030.1__CAH1093931.1__SAMEA5780031_03791__00035__D228-350
D2
medium
residues 62-84_252-314
Domain cluster:
rep: GyrB-like_ATPase_domain_protein__YP_784275__Nile_crocodilepox_virus__1285600__D39-82_100-118_181-230
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b63A01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.74 | 69.0 | 5.03e-01 | 100.0% | 81.0% |
| 4a18P00 | 3.30.720.90 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.62 | 37.0 | 4.05e-01 | 95.3% | 74.2% |
| 4feiA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 38.0 | 3.63e-01 | 80.2% | 54.9% |
| 4nswA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 34.0 | 3.17e-01 | 72.1% | 47.7% |
| 4khbC00 | 2.30.29.210 | Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p | 0.55 | 39.0 | 3.68e-01 | 74.4% | 100.0% |
| 3t69A01 | 3.30.420.300 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain | 0.54 | 40.0 | 4.23e-01 | 96.5% | 89.3% |
| 2fwrA01 | 3.40.1170.30 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › | 0.54 | 35.0 | 4.09e-01 | 95.3% | 100.0% |
| 1aukA01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.54 | 48.0 | 3.15e-01 | 100.0% | 63.5% |
| 4h0pA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 46.0 | 3.54e-01 | 96.5% | 74.5% |
| 2itmA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 45.0 | 3.32e-01 | 95.3% | 97.9% |
| 6ksrA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 47.0 | 3.90e-01 | 100.0% | 86.9% |
| 3ll3B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 45.0 | 3.31e-01 | 96.5% | 95.5% |
| 3agrA02 | 3.30.420.540 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 45.0 | 3.03e-01 | 97.7% | 86.3% |
| 3agkA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.52 | 45.0 | 4.10e-01 | 100.0% | 75.0% |
| 2xqyA01 | 3.30.500.50 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.52 | 45.0 | 3.58e-01 | 96.5% | 86.0% |
| 3cj1A02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.52 | 45.0 | 3.22e-01 | 96.5% | 86.3% |
| 6f95A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 46.0 | 3.89e-01 | 100.0% | 98.0% |
| 4jd2B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 46.0 | 3.70e-01 | 100.0% | 89.9% |
| 3cerA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.51 | 44.0 | 3.38e-01 | 96.5% | 87.7% |
| 4af1A02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.51 | 45.0 | 4.02e-01 | 100.0% | 81.7% |
| 4hkqA04 | 3.10.20.370 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 39.0 | 4.09e-01 | 93.0% | 93.4% |
| 1dmzA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.50 | 36.0 | 3.02e-01 | 79.1% | 41.8% |
| 1xc3A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 43.0 | 4.09e-01 | 95.3% | 99.0% |
| 6ea2A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.50 | 45.0 | 3.51e-01 | 100.0% | 88.8% |
| 4c23B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 42.0 | 3.16e-01 | 96.5% | 97.9% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4981234 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.64 | 44.0 | 4.91e-01 | 95.3% | 93.8% |
| 4002771 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 42.0 | 3.67e-01 | 82.6% | 44.4% |
| 3689674 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.62 | 39.0 | 3.42e-01 | 80.2% | 43.0% |
| 3226947 | 220.1.1.7 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS | 0.61 | 43.0 | 4.03e-01 | 83.7% | 59.0% |
| 3734384 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.61 | 38.0 | 3.61e-01 | 80.2% | 53.4% |
| 3464744 | 5.1.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed | 0.60 | 40.0 | 3.26e-01 | 76.7% | 36.8% |
| 154597 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.60 | 38.0 | 3.63e-01 | 80.2% | 54.9% |
| 3519897 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 40.0 | 3.54e-01 | 82.6% | 46.9% |
| 3300056 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.58 | 38.0 | 3.83e-01 | 95.3% | 67.1% |
| 3500564 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.55 | 37.0 | 3.45e-01 | 90.7% | 56.2% |
| 3232476 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.54 | 35.0 | 3.39e-01 | 87.2% | 57.0% |
| 3771028 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.54 | 35.0 | 3.23e-01 | 86.0% | 49.6% |
| 3607340 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.54 | 48.0 | 3.45e-01 | 100.0% | 93.6% |
| None | — | 0.54 | 35.0 | 3.22e-01 | 86.0% | 49.6% | |
| 3581555 | 633.33.1.1 ↗ | alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz | 0.54 | 44.0 | 3.11e-01 | 90.7% | 83.4% |
| 3896560 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.53 | 33.0 | 2.70e-01 | 86.0% | 31.2% |
| 3616473 | 2484.1.1.99 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 | 0.53 | 47.0 | 3.63e-01 | 100.0% | 81.5% |
| 3934415 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.52 | 47.0 | 4.03e-01 | 100.0% | 80.7% |
| 3658182 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 46.0 | 3.74e-01 | 100.0% | 98.2% |
| 3911380 | 109.21.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 | 0.52 | 40.0 | 2.35e-01 | 82.6% | 42.8% |
| 4029325 | 2004.1.1.94 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 | 0.51 | 44.0 | 3.09e-01 | 98.8% | 63.3% |
| 3937613 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.51 | 46.0 | 3.98e-01 | 100.0% | 80.7% |
| 3898238 | 2484.1.1.15 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 | 0.51 | 45.0 | 3.14e-01 | 97.7% | 83.2% |
| 4029656 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 46.0 | 4.06e-01 | 100.0% | 84.0% |
| 167495 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.51 | 44.0 | 3.38e-01 | 96.5% | 87.3% |
| 3781216 | 2484.1.1.212 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RT_RNaseH | 0.51 | 46.0 | 3.91e-01 | 100.0% | 77.1% |
| 3298755 | 2484.1.1.15 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 | 0.51 | 44.0 | 3.20e-01 | 97.7% | 86.9% |
| 3294153 | 2484.1.1.5 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1 | 0.51 | 46.0 | 3.40e-01 | 100.0% | 58.2% |
| 3953212 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.51 | 45.0 | 3.92e-01 | 100.0% | 95.6% |
| 4937734 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.51 | 45.0 | 4.11e-01 | 100.0% | 77.4% |
| 5059158 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.50 | 43.0 | 3.83e-01 | 100.0% | 74.1% |
| 3780553 | 2484.1.1.15 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 | 0.50 | 44.0 | 3.23e-01 | 97.7% | 90.8% |
| 3929756 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.50 | 45.0 | 4.44e-01 | 100.0% | 93.3% |
| 4989880 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.50 | 44.0 | 3.85e-01 | 100.0% | 75.6% |
| 4158783 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.50 | 44.0 | 3.80e-01 | 96.5% | 84.4% |
| 3216450 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.50 | 44.0 | 3.73e-01 | 100.0% | 88.7% |
| 4943251 | 2484.1.1.329 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_3 | 0.50 | 43.0 | 3.81e-01 | 100.0% | 75.6% |
| 3727916 | 2004.1.1.211 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CLP1_P | 0.50 | 44.0 | 3.19e-01 | 100.0% | 60.0% |