←Back to structures
H18_Tanzania_scaffold_0_prodigal-single.1__X__X__00033
Bact-VirH18_Tanzania_scaffold_0_prodigal-single.1__X__X__00033
Identity
- Kingdom:
- phage
Quality
86.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-54
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o5cA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.66 | 52.0 | 4.76e-01 | 92.5% | 93.4% |
| 1fx7B03 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.65 | 52.0 | 4.67e-01 | 92.5% | 97.5% |
| 5ycqA00 | 2.30.30.390 | Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain | 0.64 | 53.0 | 4.83e-01 | 98.1% | 92.2% |
| 2ct4A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 48.0 | 4.46e-01 | 83.0% | 88.6% |
| 2fjrA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.64 | 49.0 | 4.03e-01 | 90.6% | 46.0% |
| 3udcA02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 49.0 | 5.00e-01 | 88.7% | 100.0% |
| 6iikB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.64 | 50.0 | 3.17e-01 | 94.3% | 32.3% |
| 1ex4B02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.63 | 43.0 | 4.17e-01 | 71.7% | 84.7% |
| 4a53A01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 45.0 | 4.35e-01 | 84.9% | 91.9% |
| 2gsbA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.61 | 44.0 | 3.85e-01 | 79.2% | 94.0% |
| 1y0mA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 42.0 | 4.06e-01 | 73.6% | 96.7% |
| 2pm6D01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 41.0 | 2.63e-01 | 71.7% | 37.5% |
| 3t05A02 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.60 | 52.0 | 4.24e-01 | 96.2% | 72.2% |
| 3hfnA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 47.0 | 4.61e-01 | 94.3% | 100.0% |
| 3gqbA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.59 | 49.0 | 4.51e-01 | 96.2% | 76.1% |
| 3hrsA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.59 | 46.0 | 4.28e-01 | 96.2% | 93.4% |
| 2jmbA00 | 2.40.128.290 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 | 0.59 | 50.0 | 4.44e-01 | 98.1% | 97.5% |
| 3vgzC00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 44.0 | 2.77e-01 | 83.0% | 74.6% |
| 4bpnW02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.59 | 35.0 | 3.65e-01 | 83.0% | 62.7% |
| 3gasB02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 43.0 | 3.17e-01 | 84.9% | 79.2% |
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 48.0 | 4.53e-01 | 98.1% | 83.8% |
| 4ci8A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 42.0 | 2.67e-01 | 81.1% | 99.4% |
| 5ic7A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 43.0 | 2.69e-01 | 83.0% | 89.7% |
| 1ei5A02 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 47.0 | 4.23e-01 | 98.1% | 93.9% |
| 1r5mA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 40.0 | 2.49e-01 | 75.5% | 26.8% |
| 5ajiB02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 42.0 | 4.26e-01 | 86.8% | 100.0% |
| 2q18X01 | 3.10.330.40 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.57 | 41.0 | 3.89e-01 | 83.0% | 98.6% |
| 1aisA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.56 | 43.0 | 3.74e-01 | 86.8% | 72.4% |
| 1u4cB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 41.0 | 2.62e-01 | 84.9% | 88.5% |
| 8eg0B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 39.0 | 2.40e-01 | 75.5% | 22.0% |
| 3nrlA00 | 2.40.10.390 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.55 | 42.0 | 4.01e-01 | 92.5% | 82.4% |
| 1cdwA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.55 | 43.0 | 3.77e-01 | 88.7% | 74.4% |
| 2m9uA00 | 2.30.30.850 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 45.0 | 3.93e-01 | 100.0% | 71.9% |
| 3jb9K01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 39.0 | 2.56e-01 | 86.8% | 92.9% |
| 1wzlA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 44.0 | 3.81e-01 | 96.2% | 95.2% |
| 2x1wO01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.58e-01 | 96.2% | 61.1% |
| 1bagA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 41.0 | 3.67e-01 | 92.5% | 76.9% |
| 4cswA02 | 3.40.366.30 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 | 0.51 | 40.0 | 2.89e-01 | 92.5% | 54.5% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3578824 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.75 | 59.0 | 5.03e-01 | 88.7% | 55.6% |
| 4143691 | 2004.1.1.10 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab | 0.73 | 48.0 | 2.93e-01 | 98.1% | 11.4% |
| 4369736 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.71 | 55.0 | 5.84e-01 | 86.8% | 100.0% |
| 3663352 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 48.0 | 4.69e-01 | 71.7% | 70.0% |
| 3570978 | 4.2.1.3 ↗ | beta barrels › SH3 › SAND › SAND › RAMA | 0.71 | 60.0 | 5.12e-01 | 98.1% | 83.3% |
| 5005813 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 56.0 | 5.71e-01 | 94.3% | 96.0% |
| 4254867 | 375.1.4.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C | 0.70 | 48.0 | 4.81e-01 | 73.6% | 100.0% |
| 3959495 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.69 | 56.0 | 5.01e-01 | 92.5% | 70.5% |
| 5024805 | 4.2.1.3 ↗ | beta barrels › SH3 › SAND › SAND › RAMA | 0.68 | 58.0 | 5.11e-01 | 98.1% | 80.0% |
| 4031578 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 53.0 | 5.43e-01 | 94.3% | 98.0% |
| 4409482 | 3158.1.1.2 ↗ | beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF2777 | 0.65 | 54.0 | 4.95e-01 | 98.1% | 80.0% |
| 3222051 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 51.0 | 4.90e-01 | 90.6% | 86.2% |
| 4103373 | 375.1.1.47 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC | 0.65 | 48.0 | 4.84e-01 | 83.0% | 100.0% |
| 4182977 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.65 | 51.0 | 5.01e-01 | 92.5% | 85.0% |
| 5040153 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 50.0 | 4.57e-01 | 90.6% | 100.0% |
| 3671149 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.63 | 42.0 | 2.58e-01 | 71.7% | 29.7% |
| 5054668 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 46.0 | 4.85e-01 | 94.3% | 100.0% |
| 3499768 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 44.0 | 2.73e-01 | 77.4% | 96.1% |
| 3715045 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.61 | 44.0 | 4.06e-01 | 79.2% | 74.3% |
| 3978012 | 11.1.4.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C | 0.61 | 49.0 | 4.15e-01 | 100.0% | 53.3% |
| 1345445 | 11.1.4.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C | 0.60 | 49.0 | 4.16e-01 | 100.0% | 54.5% |
| 3854638 | 4.1.1.131 ↗ | beta barrels › SH3 › SH3 › SH3 › MLVIN_C | 0.60 | 49.0 | 4.13e-01 | 98.1% | 58.0% |
| 4631118 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 50.0 | 2.78e-01 | 92.5% | 11.4% |
| 3495794 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 40.0 | 2.80e-01 | 71.7% | 48.2% |
| 3247746 | 5.1.4.303 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS2_N, BBS2_Mid | 0.59 | 44.0 | 2.84e-01 | 84.9% | 87.5% |
| 184661 | 9.16.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 › Atu4866 | 0.59 | 50.0 | 4.44e-01 | 98.1% | 97.5% |
| 3575714 | 5.1.4.329 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 | 0.59 | 45.0 | 2.71e-01 | 84.9% | 80.4% |
| 3775796 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.59 | 40.0 | 2.86e-01 | 73.6% | 30.0% |
| 3442695 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.58 | 39.0 | 2.71e-01 | 71.7% | 32.7% |
| 3997447 | 5.1.4.303 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS2_N, BBS2_Mid | 0.58 | 44.0 | 2.83e-01 | 86.8% | 89.2% |
| 3651616 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.58 | 43.0 | 3.65e-01 | 83.0% | 82.1% |
| 3436874 | 375.1.1.260 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › WD40 | 0.57 | 39.0 | 2.68e-01 | 73.6% | 54.7% |
| 3645935 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.57 | 40.0 | 2.84e-01 | 77.4% | 58.5% |
| 4646107 | 5.1.4.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 | 0.56 | 39.0 | 2.40e-01 | 73.6% | 25.5% |
| 4386251 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.56 | 47.0 | 3.93e-01 | 96.2% | 82.1% |
| 3172856 | 5.1.4.575 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30290 | 0.56 | 39.0 | 2.56e-01 | 75.5% | 34.3% |
| 4940665 | 9.16.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 | 0.55 | 45.0 | 4.05e-01 | 100.0% | 98.8% |
| 3624582 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.54 | 40.0 | 2.38e-01 | 81.1% | 77.3% |
| 3166171 | 3355.1.1.16 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DcuC | 0.53 | 41.0 | 2.37e-01 | 84.9% | 11.0% |
| 3656586 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.53 | 38.0 | 3.70e-01 | 77.4% | 80.0% |
| 5070897 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.52 | 41.0 | 3.74e-01 | 100.0% | 64.0% |
| 3551782 | 11.1.1.317 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VEGFR-1-like_Ig-like | 0.51 | 43.0 | 3.54e-01 | 96.2% | 57.0% |
| 5082471 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.50 | 40.0 | 3.47e-01 | 100.0% | 54.4% |