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H18_Tanzania_scaffold_0_prodigal-single.1__X__X__00250
Bact-VirH18_Tanzania_scaffold_0_prodigal-single.1__X__X__00250
Identity
- Kingdom:
- phage
Quality
66.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 138-222
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v31A01 | 2.40.30.180 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain | 0.63 | 45.0 | 4.37e-01 | 76.5% | 75.3% |
| 4zgnB00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.61 | 54.0 | 5.05e-01 | 97.6% | 88.3% |
| 1wdiA02 | 2.40.10.240 | Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like | 0.61 | 43.0 | 4.53e-01 | 85.9% | 86.3% |
| 1ymmE01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 50.0 | 4.49e-01 | 97.6% | 87.2% |
| 2dmcA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 41.0 | 4.36e-01 | 96.5% | 94.6% |
| 2ra1A04 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 47.0 | 4.51e-01 | 96.5% | 83.5% |
| 5whzH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 46.0 | 4.12e-01 | 96.5% | 85.4% |
| 1hxmB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 46.0 | 4.11e-01 | 97.6% | 84.0% |
| 2h36X00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 32.0 | 3.05e-01 | 96.5% | 49.1% |
| 4wiqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 42.0 | 3.93e-01 | 97.6% | 75.5% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3822850 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.62 | 55.0 | 5.26e-01 | 97.6% | 92.0% |
| 5001596 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.62 | 53.0 | 5.27e-01 | 95.3% | 95.6% |
| 4952455 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.62 | 54.0 | 5.35e-01 | 96.5% | 96.6% |
| 4945827 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.61 | 53.0 | 5.29e-01 | 97.6% | 96.7% |
| 3698630 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.60 | 52.0 | 4.88e-01 | 97.6% | 89.5% |
| 3496776 | 1.1.8.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › RIBIOP_C | 0.59 | 52.0 | 4.24e-01 | 97.6% | 65.6% |
| 3538578 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 47.0 | 4.56e-01 | 96.5% | 78.9% |
| 3602123 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.57 | 45.0 | 4.67e-01 | 96.5% | 96.2% |
| 3269786 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.55 | 43.0 | 4.23e-01 | 100.0% | 78.9% |
| 4105189 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.54 | 43.0 | 4.16e-01 | 92.9% | 77.9% |
| 3217985 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 41.0 | 3.80e-01 | 96.5% | 65.5% |
| 3969772 | 11.1.1.42 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PapD_C | 0.53 | 40.0 | 3.96e-01 | 94.1% | 75.8% |
| 3275452 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 43.0 | 4.06e-01 | 100.0% | 72.7% |
| 3579802 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 39.0 | 3.93e-01 | 96.5% | 83.5% |
| 3541118 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.52 | 45.0 | 4.04e-01 | 100.0% | 76.0% |
| 3258896 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 43.0 | 4.21e-01 | 95.3% | 91.6% |
| 4246480 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.51 | 41.0 | 4.03e-01 | 94.1% | 81.1% |
| 5070722 | 11.1.1.246 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 | 0.50 | 40.0 | 3.95e-01 | 98.8% | 80.0% |
D2
medium
residues 15-26_112-132_232-315
D3
medium
residues 27-111
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c19A01 | 3.30.70.1380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like | 0.61 | 38.0 | 3.67e-01 | 100.0% | 54.5% |
| 3lnnA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.59 | 39.0 | 3.81e-01 | 100.0% | 61.3% |
| 1b7yB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.59 | 40.0 | 3.98e-01 | 100.0% | 68.6% |
| 5zwzA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 33.0 | 3.59e-01 | 88.2% | 65.7% |
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 38.0 | 3.68e-01 | 100.0% | 61.1% |
| 3lvtA03 | 2.60.40.2210 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 41.0 | 3.61e-01 | 100.0% | 51.9% |
| 3s9xA00 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.51 | 46.0 | 3.76e-01 | 100.0% | 63.5% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3473588 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 45.0 | 4.34e-01 | 100.0% | 55.8% |
| 3672221 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.66 | 34.0 | 3.19e-01 | 90.6% | 38.1% |
| 4275176 | 304.102.1.5 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 | 0.66 | 50.0 | 3.65e-01 | 100.0% | 30.0% |
| 5033279 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.66 | 50.0 | 3.60e-01 | 100.0% | 28.7% |
| 5001314 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.66 | 49.0 | 3.57e-01 | 100.0% | 28.2% |
| 4943359 | 304.102.1.13 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 | 0.65 | 49.0 | 3.61e-01 | 100.0% | 29.4% |
| 3645957 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.65 | 36.0 | 3.23e-01 | 92.9% | 36.8% |
| 3592819 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.63 | 35.0 | 3.17e-01 | 90.6% | 38.3% |
| 3788989 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.61 | 38.0 | 3.91e-01 | 100.0% | 66.3% |
| 4977671 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.61 | 45.0 | 3.77e-01 | 100.0% | 43.1% |
| 4300476 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.58 | 52.0 | 3.83e-01 | 100.0% | 46.7% |
| 4331416 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.58 | 51.0 | 3.81e-01 | 100.0% | 48.2% |
| 3640321 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.58 | 51.0 | 3.55e-01 | 100.0% | 40.7% |
| 3782757 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.58 | 51.0 | 3.47e-01 | 100.0% | 45.8% |
| 4656922 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.57 | 31.0 | 2.78e-01 | 90.6% | 34.2% |
| 3993801 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 31.0 | 2.49e-01 | 96.5% | 25.7% |
| 3702711 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.56 | 48.0 | 4.77e-01 | 100.0% | 92.2% |
| 4254454 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.55 | 47.0 | 3.46e-01 | 100.0% | 40.8% |
| 4929832 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.54 | 33.0 | 3.17e-01 | 71.8% | 49.0% |
| 1405132 | 304.51.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › RAMPs | 0.54 | 46.0 | 3.46e-01 | 100.0% | 81.4% |
| 3648704 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.54 | 32.0 | 3.18e-01 | 92.9% | 54.4% |
| 3178013 | 304.9.1.103 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF26763 | 0.54 | 36.0 | 3.44e-01 | 98.8% | 59.0% |
| 3664669 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.53 | 40.0 | 4.08e-01 | 83.5% | 96.2% |
| 4058358 | 327.11.2.26 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_N4BP1_1st | 0.52 | 36.0 | 3.76e-01 | 100.0% | 78.8% |
| 4614439 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.51 | 32.0 | 3.31e-01 | 100.0% | 67.5% |
| 3406934 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.50 | 35.0 | 2.38e-01 | 72.9% | 77.9% |