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H1c1_full_scaffold_271_prodigal-single.1__X__X__00001

Bact-Vir

H1c1_full_scaffold_271_prodigal-single.1__X__X__00001

Identity

Kingdom:
phage

Quality

77.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-57
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.80 70.0 5.16e-01 100.0% 41.5%
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.79 53.0 4.41e-01 78.3% 41.0%
3t7lA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.77 67.0 5.77e-01 100.0% 70.3%
2zetC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.76 65.0 4.68e-01 100.0% 34.0%
2d8yA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.76 53.0 4.55e-01 73.9% 59.7%
2gviA03 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.76 51.0 5.67e-01 71.7% 97.1%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.74 51.0 4.09e-01 73.9% 38.3%
2cszA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.72 59.0 5.19e-01 100.0% 61.8%
2d8xA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.71 50.0 4.40e-01 76.1% 62.9%
6u4mA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.71 49.0 4.41e-01 73.9% 67.7%
2luyA01 3.30.60.210 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Stc1 domain 0.71 49.0 4.63e-01 73.9% 89.5%
2m85A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.70 61.0 5.41e-01 97.8% 75.4%
2xqnT01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.70 49.0 4.49e-01 76.1% 69.4%
1rfhA01 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.68 46.0 4.78e-01 71.7% 82.9%
5y20A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.68 57.0 5.53e-01 100.0% 98.1%
2miuA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.67 47.0 3.76e-01 76.1% 43.9%
4n4fA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.67 46.0 4.84e-01 73.9% 92.5%
3o70A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 55.0 5.33e-01 100.0% 87.3%
2xjyA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.65 46.0 4.23e-01 76.1% 71.4%
5tdrA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 54.0 4.76e-01 95.7% 68.6%
2xocA01 3.30.40.140 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.64 53.0 4.54e-01 95.7% 92.3%
1wffA00 4.10.1110.10 Few Secondary Structures › Irregular › Zf-an1 domain › AN1-like Zinc finger 0.64 46.0 3.91e-01 97.8% 43.5%
2ewlA00 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 43.0 4.08e-01 71.7% 80.4%
1wevA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 55.0 4.97e-01 100.0% 84.4%
1x68A00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.63 43.0 3.77e-01 73.9% 56.6%
4bbqA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 52.0 4.62e-01 97.8% 81.4%
2yt5A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 54.0 4.82e-01 100.0% 78.8%
5xfoA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 46.0 4.40e-01 89.1% 87.5%
4hi8B00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.60 48.0 4.33e-01 100.0% 77.8%
2miqA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 50.0 4.06e-01 100.0% 50.0%
5z8nA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 46.0 4.59e-01 93.5% 100.0%
2ku3A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 50.0 4.62e-01 100.0% 77.4%
1weeA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 47.0 4.23e-01 100.0% 75.0%
1yuiA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.56 38.0 3.64e-01 73.9% 59.3%
2mbvA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.56 44.0 3.69e-01 100.0% 55.2%
5feyA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 44.0 3.86e-01 97.8% 60.3%
1rmdA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 42.0 3.59e-01 93.5% 60.5%
1x62A01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.53 41.0 3.94e-01 100.0% 91.7%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957868 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.82 56.0 6.10e-01 71.7% 94.3%
4998890 377.1.1.7 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR 0.82 56.0 5.67e-01 71.7% 73.3%
3881136 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.81 69.0 6.73e-01 100.0% 88.0%
3938379 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.81 70.0 6.33e-01 100.0% 76.9%
5021070 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.81 54.0 5.88e-01 76.1% 91.4%
3547416 376.1.3.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_CARP1-2 0.81 69.0 6.56e-01 100.0% 81.8%
4958983 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.80 63.0 6.36e-01 100.0% 88.9%
3487082 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.80 69.0 5.81e-01 100.0% 67.5%
5042937 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.80 66.0 6.29e-01 100.0% 80.0%
3927094 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.80 68.0 6.00e-01 100.0% 68.6%
3237892 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.80 68.0 6.29e-01 97.8% 88.3%
3847015 192.7.1.79 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FYVE_2 0.80 69.0 6.39e-01 100.0% 80.0%
3627614 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.80 68.0 6.32e-01 100.0% 83.3%
3478913 376.1.3.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.79 69.0 5.67e-01 100.0% 56.5%
3472338 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.79 69.0 6.36e-01 100.0% 80.0%
3562969 376.1.3.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.79 69.0 6.36e-01 100.0% 80.0%
3565781 376.1.2.25 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › FYVE 0.79 68.0 6.13e-01 100.0% 83.1%
3706927 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.79 68.0 6.31e-01 100.0% 88.3%
4082146 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.79 51.0 5.21e-01 76.1% 68.9%
4959872 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.78 61.0 6.40e-01 97.8% 100.0%
3797752 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.78 66.0 5.73e-01 100.0% 73.3%
5080685 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.77 65.0 5.76e-01 97.8% 65.7%
3255227 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.77 56.0 4.41e-01 80.4% 37.9%
3845756 376.1.3.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.77 65.0 5.90e-01 100.0% 72.3%
3869401 376.1.3.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.77 65.0 4.69e-01 100.0% 34.3%
3715785 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.77 66.0 5.61e-01 100.0% 72.2%
3511728 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.77 50.0 5.10e-01 76.1% 68.9%
3766800 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.77 64.0 6.19e-01 100.0% 85.5%
4940794 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.77 61.0 6.03e-01 100.0% 82.0%
3900403 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.77 66.0 6.30e-01 100.0% 85.5%
3593722 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.77 67.0 6.15e-01 100.0% 91.7%
3607925 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.77 64.0 5.60e-01 100.0% 65.3%
5021067 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 54.0 4.15e-01 76.1% 98.1%
185882 376.1.3.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.76 60.0 5.88e-01 89.1% 90.2%
3718357 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.76 63.0 6.39e-01 100.0% 100.0%
5074886 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.76 62.0 5.42e-01 97.8% 60.0%
5046967 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.76 55.0 5.79e-01 89.1% 92.5%
3739083 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.76 65.0 5.59e-01 100.0% 70.7%
4930892 377.1.1.7 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR 0.75 51.0 5.20e-01 71.7% 73.3%
5016275 377.1.1.7 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR 0.75 51.0 5.71e-01 78.3% 94.3%
3910122 376.1.3.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.75 63.0 5.61e-01 100.0% 67.1%
3506139 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.75 63.0 5.12e-01 100.0% 50.0%
3435304 376.1.1.52 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › LIM 0.75 52.0 4.67e-01 73.9% 67.7%
3259129 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.75 64.0 5.64e-01 100.0% 81.4%
3898766 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.75 64.0 6.10e-01 100.0% 92.7%
4442858 931.1.1.15 few secondary structure elements › Metallothionein › Metallothionein › Metallothionein › PF26927 0.75 50.0 5.40e-01 71.7% 94.3%
3472116 376.1.3.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.74 57.0 5.76e-01 87.0% 93.3%
3608274 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.74 63.0 6.04e-01 100.0% 87.3%
3431026 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.74 54.0 4.25e-01 76.1% 37.9%
5045480 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.74 49.0 5.30e-01 76.1% 91.4%
3705738 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.74 62.0 5.76e-01 97.8% 80.0%
3515095 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.74 46.0 5.11e-01 71.7% 100.0%
4957186 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.74 50.0 4.93e-01 71.7% 70.0%
5066402 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.74 55.0 4.89e-01 82.6% 86.8%
3636589 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.74 57.0 4.63e-01 100.0% 44.4%
3592068 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.73 60.0 5.69e-01 100.0% 77.6%
5008357 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.73 51.0 5.52e-01 80.4% 97.1%
3235494 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.73 60.0 5.79e-01 97.8% 94.5%
4430351 376.1.3.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.73 57.0 5.49e-01 91.3% 80.0%
3717337 376.1.1.165 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › FYVE 0.71 55.0 4.74e-01 87.0% 54.7%
4054302 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.71 49.0 4.99e-01 73.9% 93.3%
5067072 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.71 56.0 5.52e-01 100.0% 84.0%
3438007 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.71 52.0 4.21e-01 82.6% 41.1%
3504555 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.70 49.0 4.10e-01 73.9% 50.0%
3717537 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.69 56.0 5.39e-01 100.0% 81.8%
3593749 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.69 57.0 5.02e-01 100.0% 70.7%
3256364 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.68 48.0 4.25e-01 76.1% 62.9%
3342185 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.62 49.0 3.93e-01 89.1% 46.3%
3911587 376.1.2.6 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PET 0.60 48.0 3.83e-01 95.7% 85.7%
5001950 266.1.1.1 a+b two layers › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylat_synt 0.58 48.0 3.07e-01 95.7% 79.9%
3736484 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 49.0 3.95e-01 100.0% 76.8%
3628251 375.14.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.55 36.0 3.75e-01 71.7% 77.5%
5019399 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.55 45.0 4.38e-01 100.0% 94.5%
3624551 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.53 43.0 4.29e-01 97.8% 88.0%
3776782 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.53 44.0 3.81e-01 95.7% 100.0%
5072385 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.52 35.0 2.98e-01 71.7% 62.4%
4972304 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.51 34.0 2.96e-01 71.7% 62.4%