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H1c1_full_scaffold_271_prodigal-single.1__X__X__00040

Bact-Vir

H1c1_full_scaffold_271_prodigal-single.1__X__X__00040

Identity

Kingdom:
phage

Quality

75.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-91
PDB
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q47A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 45.0 2.83e-01 84.4% 12.4%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.66 46.0 4.10e-01 74.4% 52.0%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.63 47.0 4.00e-01 83.3% 48.6%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.63 48.0 4.13e-01 83.3% 52.5%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 47.0 3.02e-01 85.6% 39.2%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.61 46.0 3.87e-01 83.3% 47.7%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 50.0 3.53e-01 94.4% 92.8%
5kkuD00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.60 45.0 3.14e-01 78.9% 65.8%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 40.0 3.78e-01 75.6% 56.9%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.59 52.0 4.52e-01 96.7% 63.8%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.59 48.0 4.14e-01 87.8% 91.4%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.59 46.0 3.07e-01 84.4% 21.8%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.59 45.0 3.80e-01 82.2% 57.3%
3wmyA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 52.0 3.62e-01 100.0% 89.4%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.58 45.0 3.28e-01 81.1% 34.3%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.58 37.0 3.74e-01 97.8% 65.2%
4bd4A00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.58 48.0 4.50e-01 90.0% 100.0%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.57 44.0 3.74e-01 83.3% 83.6%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 47.0 3.17e-01 95.6% 72.0%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.56 50.0 3.98e-01 100.0% 53.8%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.55 48.0 3.79e-01 97.8% 78.5%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 44.0 3.13e-01 90.0% 68.0%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 47.0 3.78e-01 97.8% 85.8%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.54 46.0 4.15e-01 93.3% 77.4%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.53 46.0 3.66e-01 96.7% 94.5%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.52 40.0 3.88e-01 85.6% 95.1%
6mrfA00 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.52 41.0 3.00e-01 85.6% 68.8%
1bt9A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.51 41.0 2.79e-01 86.7% 98.2%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.50 46.0 3.96e-01 100.0% 73.6%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.50 42.0 4.03e-01 94.4% 96.2%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3228242 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.84 75.0 7.20e-01 93.3% 100.0%
3685667 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.84 74.0 6.65e-01 93.3% 84.2%
6689 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.82 71.0 6.28e-01 92.2% 80.2%
4955671 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.76 60.0 6.36e-01 84.4% 96.2%
3258590 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.73 62.0 6.09e-01 91.1% 98.9%
3295586 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.71 52.0 4.25e-01 83.3% 42.4%
3373176 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.70 61.0 5.27e-01 94.4% 97.8%
2771632 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.69 58.0 4.51e-01 90.0% 79.4%
3650579 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.69 60.0 5.12e-01 94.4% 97.9%
3485290 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.69 62.0 4.56e-01 100.0% 55.7%
3299711 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.68 59.0 5.12e-01 93.3% 99.3%
3849839 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.68 59.0 5.75e-01 95.6% 97.0%
4373556 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.68 56.0 4.41e-01 90.0% 81.1%
4010371 295.1.1.45 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF30238 0.68 52.0 5.18e-01 82.2% 100.0%
4976982 330.6.1.0 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.68 40.0 3.75e-01 98.9% 48.2%
4013024 5.1.4.249 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 0.67 53.0 3.33e-01 83.3% 36.0%
3233750 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.67 57.0 5.85e-01 92.2% 100.0%
4025325 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.67 41.0 4.97e-01 71.1% 100.0%
2410020 881.1.1.4 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DcrB 0.66 49.0 4.20e-01 84.4% 48.6%
4954283 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.64 46.0 3.87e-01 83.3% 44.7%
3811221 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 58.0 3.70e-01 100.0% 90.0%
4987012 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.64 47.0 3.93e-01 83.3% 46.0%
3303563 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.63 46.0 3.85e-01 83.3% 43.1%
3302171 11.10.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › Sina_TRAF 0.63 48.0 4.22e-01 82.2% 80.7%
5052406 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.62 56.0 4.48e-01 100.0% 61.7%
3290484 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.62 47.0 3.79e-01 83.3% 41.1%
5038973 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 49.0 3.26e-01 85.6% 21.5%
3934509 3369.1.1.0 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 0.62 47.0 3.67e-01 80.0% 51.9%
3985863 219.1.1.109 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Toxin_15 0.62 52.0 3.89e-01 88.9% 70.2%
3959925 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.61 46.0 4.50e-01 83.3% 73.0%
3536447 4026.1.1.1 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.61 53.0 4.55e-01 96.7% 64.1%
4960428 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.61 43.0 3.08e-01 73.3% 36.4%
3841716 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.61 50.0 4.22e-01 91.1% 56.8%
5007185 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.60 53.0 4.53e-01 97.8% 90.3%
3497302 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.60 50.0 4.35e-01 92.2% 71.4%
3398404 220.1.1.42 beta barrels › PH domain-like › PH domain-like › PH domain-like › INPP5B_PH 0.60 49.0 4.25e-01 88.9% 68.6%
3253359 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 51.0 3.41e-01 93.3% 95.6%
3512529 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.60 45.0 3.80e-01 82.2% 76.2%
3597681 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.59 53.0 3.56e-01 100.0% 83.2%
4825040 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.59 41.0 3.50e-01 98.9% 45.1%
5049570 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.59 41.0 3.04e-01 72.2% 35.2%
3926758 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 42.0 3.50e-01 76.7% 68.5%
3983708 219.1.1.109 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Toxin_15 0.58 49.0 3.78e-01 90.0% 45.6%
5012403 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.04e-01 93.3% 55.2%
None 0.58 46.0 3.09e-01 85.6% 22.0%
3623481 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.58 49.0 3.93e-01 93.3% 85.6%
3936801 10.1.1.91 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF29324 0.58 53.0 3.70e-01 100.0% 50.5%
3199793 5.1.5.179 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Clathrin-link 0.58 46.0 3.11e-01 85.6% 22.6%
4049494 5.1.2.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_62 0.58 51.0 3.56e-01 100.0% 86.7%
3637283 5.1.4.441 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin-link 0.58 46.0 3.07e-01 86.7% 31.9%
3168944 5.1.4.97 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop 0.57 52.0 3.34e-01 100.0% 91.2%
3999575 4026.1.1.1 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.57 50.0 4.35e-01 96.7% 68.9%
4941591 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 41.0 3.61e-01 85.6% 48.3%
3959606 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 44.0 3.66e-01 85.6% 46.7%
3556738 220.1.1.40 beta barrels › PH domain-like › PH domain-like › PH domain-like › OCRL_clath_bd 0.56 48.0 4.27e-01 92.2% 76.0%
3814983 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.56 43.0 4.60e-01 85.6% 100.0%
3479226 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.56 48.0 4.60e-01 98.9% 82.0%
3164017 9.11.1.0 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.55 44.0 4.43e-01 86.7% 96.7%
3588533 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.55 48.0 3.77e-01 96.7% 78.9%
4975739 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 44.0 2.86e-01 85.6% 76.3%
3909439 220.1.1.40 beta barrels › PH domain-like › PH domain-like › PH domain-like › OCRL_clath_bd 0.54 46.0 4.26e-01 93.3% 87.8%
3976326 5084.3.1.2 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.53 40.0 3.29e-01 82.2% 57.8%
4973001 4041.1.1.0 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.52 44.0 3.40e-01 91.1% 91.1%
4524129 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.52 41.0 4.08e-01 88.9% 98.9%
5033737 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.51 42.0 3.40e-01 92.2% 83.0%
4958749 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.50 42.0 3.33e-01 91.1% 87.9%
4943345 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 45.0 4.41e-01 100.0% 88.0%
D2 high residues 102-149
PDB