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H1c1_full_scaffold_271_prodigal-single.1__X__X__00061
Bact-VirH1c1_full_scaffold_271_prodigal-single.1__X__X__00061
Identity
- Kingdom:
- phage
Quality
70.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-71
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ircA01 | 1.20.1230.10 | Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain | 0.84 | 61.0 | 4.05e-01 | 77.8% | 21.2% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 56.0 | 5.23e-01 | 75.9% | 61.2% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.77 | 54.0 | 5.41e-01 | 77.8% | 72.7% |
| 2j5iA02 | 6.10.250.2850 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.77 | 52.0 | 5.87e-01 | 75.9% | 100.0% |
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.77 | 55.0 | 5.28e-01 | 75.9% | 73.8% |
| 7kznP01 | 3.30.740.10 | Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; | 0.72 | 51.0 | 4.33e-01 | 94.4% | 44.1% |
| 6t4hA03 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.71 | 60.0 | 4.19e-01 | 94.4% | 91.3% |
| 3k3uA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.68 | 48.0 | 3.59e-01 | 75.9% | 48.2% |
| 8eefB01 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.66 | 50.0 | 3.94e-01 | 85.2% | 64.3% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.66 | 48.0 | 3.97e-01 | 77.8% | 70.5% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.65 | 44.0 | 4.53e-01 | 70.4% | 76.9% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.65 | 55.0 | 4.80e-01 | 94.4% | 71.6% |
| 4gdxA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.65 | 52.0 | 4.18e-01 | 90.7% | 82.9% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 47.0 | 4.64e-01 | 94.4% | 73.7% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.63 | 43.0 | 3.65e-01 | 70.4% | 54.7% |
| 2bduA02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.63 | 54.0 | 4.85e-01 | 96.3% | 79.7% |
| 4j8dD00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 47.0 | 3.44e-01 | 87.0% | 28.4% |
| 1kfdA02 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.62 | 43.0 | 3.93e-01 | 72.2% | 63.4% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.61 | 42.0 | 3.80e-01 | 72.2% | 51.9% |
| 2etnB01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.61 | 43.0 | 3.85e-01 | 74.1% | 71.1% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.61 | 53.0 | 4.70e-01 | 98.1% | 100.0% |
| 2cwoA01 | 1.20.58.1200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain | 0.59 | 41.0 | 3.75e-01 | 74.1% | 66.2% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.59 | 47.0 | 4.06e-01 | 94.4% | 55.2% |
| 4gczA03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.58 | 42.0 | 3.94e-01 | 87.0% | 63.1% |
| 1b72A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.58 | 37.0 | 3.48e-01 | 85.2% | 50.0% |
| 1u5pA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 42.0 | 3.37e-01 | 79.6% | 42.6% |
| 1b06A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.57 | 41.0 | 3.83e-01 | 87.0% | 61.2% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.56 | 35.0 | 3.33e-01 | 98.1% | 50.0% |
| 3tufA00 | 1.10.287.4300 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like | 0.55 | 44.0 | 3.52e-01 | 92.6% | 59.1% |
| 2hepA00 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.54 | 39.0 | 4.25e-01 | 75.9% | 97.6% |
| 2fsjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 45.0 | 3.49e-01 | 100.0% | 63.0% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4235299 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.86 | 63.0 | 4.24e-01 | 77.8% | 22.8% |
| 3579493 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.84 | 60.0 | 4.79e-01 | 77.8% | 39.0% |
| 3623842 | 601.24.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) | 0.83 | 62.0 | 4.67e-01 | 79.6% | 35.2% |
| 3720226 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.82 | 60.0 | 4.42e-01 | 77.8% | 31.1% |
| 3717826 | 547.1.1.0 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain | 0.82 | 60.0 | 4.77e-01 | 77.8% | 40.0% |
| 3998637 | 192.8.1.255 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CC1_STRIPAK | 0.82 | 62.0 | 4.72e-01 | 100.0% | 36.7% |
| 3938243 | 3065.1.1.1 ↗ | alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › ANIS5_cation-bd | 0.81 | 58.0 | 3.70e-01 | 75.9% | 16.7% |
| 3212006 | 601.24.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) | 0.81 | 60.0 | 4.49e-01 | 79.6% | 33.8% |
| 3962863 | 375.1.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 | 0.80 | 51.0 | 4.18e-01 | 72.2% | 36.8% |
| 3472949 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.80 | 70.0 | 4.54e-01 | 94.4% | 41.4% |
| 3852 | 622.2.1.1 ↗ | alpha bundles › YvfG-like › YvfG-like › YvfG-like › YvfG | 0.78 | 56.0 | 5.23e-01 | 75.9% | 61.2% |
| 3925867 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.78 | 56.0 | 3.31e-01 | 77.8% | 10.6% |
| 3582573 | 192.24.1.0 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain | 0.77 | 59.0 | 4.64e-01 | 100.0% | 40.9% |
| 3630104 | 192.24.1.6 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.77 | 59.0 | 3.51e-01 | 100.0% | 11.8% |
| 3777150 | 3291.1.1.125 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › zf-B_box | 0.76 | 53.0 | 4.06e-01 | 77.8% | 32.0% |
| 4031490 | 632.2.1.5 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 | 0.76 | 59.0 | 5.31e-01 | 100.0% | 61.3% |
| 3389059 | 4082.1.1.1 ↗ | alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain › Hairy_orange | 0.75 | 54.0 | 5.40e-01 | 75.9% | 74.5% |
| 4354962 | 3390.1.1.0 ↗ | extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT | 0.73 | 51.0 | 5.28e-01 | 72.2% | 80.0% |
| 3956826 | 150.8.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE | 0.72 | 62.0 | 4.36e-01 | 96.3% | 81.8% |
| 3930816 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.72 | 56.0 | 3.53e-01 | 96.3% | 16.7% |
| 4928588 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 51.0 | 3.97e-01 | 94.4% | 35.0% |
| 3303117 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.70 | 61.0 | 5.26e-01 | 98.1% | 72.9% |
| 4026047 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.70 | 54.0 | 4.70e-01 | 100.0% | 54.1% |
| 4957605 | 5076.2.1.13 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF7847 | 0.69 | 60.0 | 4.00e-01 | 98.1% | 32.7% |
| 4940728 | 614.1.1.0 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain | 0.69 | 54.0 | 5.63e-01 | 100.0% | 94.0% |
| 4011398 | 633.24.1.0 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain | 0.69 | 50.0 | 4.46e-01 | 100.0% | 51.8% |
| 5076721 | 5058.1.1.103 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › HpaB_N | 0.68 | 48.0 | 4.05e-01 | 75.9% | 43.2% |
| 4009690 | 7523.1.1.25 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Phosphonate-bd | 0.68 | 47.0 | 3.18e-01 | 72.2% | 20.5% |
| 3770066 | 3291.1.1.169 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › KIF21A_4th | 0.66 | 46.0 | 3.16e-01 | 77.8% | 20.5% |
| 4562953 | 2004.1.1.43 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SRP54 | 0.66 | 48.0 | 3.06e-01 | 100.0% | 15.1% |
| 3913300 | 3755.3.1.303 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A_4th | 0.65 | 44.0 | 3.13e-01 | 70.4% | 94.7% |
| 3285436 | 3380.1.1.0 ↗ | a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 | 0.64 | 50.0 | 4.90e-01 | 100.0% | 78.3% |
| 3204136 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.64 | 55.0 | 4.85e-01 | 98.1% | 81.2% |
| 3399070 | 4082.1.1.1 ↗ | alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain › Hairy_orange | 0.64 | 45.0 | 4.57e-01 | 77.8% | 74.5% |
| 4003615 | 5054.1.1.59 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 | 0.63 | 46.0 | 3.06e-01 | 100.0% | 19.1% |
| 4191254 | 1023.1.1.1 ↗ | beta barrels › Cell division protein ZapC N-terminal domain › Cell division protein ZapC N-terminal domain › Cell division protein ZapC N-terminal domain › ZapC_N | 0.62 | 50.0 | 4.35e-01 | 94.4% | 91.1% |
| 4982611 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 44.0 | 3.30e-01 | 94.4% | 30.2% |
| 3178532 | 109.4.1.1764 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 | 0.60 | 43.0 | 2.85e-01 | 75.9% | 52.7% |
| 1007309 | 633.6.1.1 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 | 0.60 | 50.0 | 3.62e-01 | 94.4% | 54.3% |
| 3623057 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.60 | 50.0 | 2.85e-01 | 94.4% | 20.3% |
| 3921001 | 109.4.1.1472 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2, Thoc2, THOC2_N | 0.59 | 50.0 | 2.72e-01 | 100.0% | 8.0% |
| 3945398 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.58 | 49.0 | 3.62e-01 | 100.0% | 45.0% |
| 3839497 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.58 | 43.0 | 3.70e-01 | 94.4% | 50.6% |
| 4043979 | 3812.1.1.4 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › GrpE | 0.52 | 41.0 | 4.03e-01 | 100.0% | 78.3% |
D2
medium
residues 115-192
Domain cluster:
representative