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H1c1_full_scaffold_271_prodigal-single.1__X__X__00067

Bact-Vir

H1c1_full_scaffold_271_prodigal-single.1__X__X__00067

Identity

Kingdom:
phage

Quality

91.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-193
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF07728.21 best AAA_5 83.0 2.90e-23 80.5% 99.3%
PF00004.36 AAA 25.6 2.10e-05 71.0% 55.7%
D2 high residues 199-300
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08406.17 best CbbQ_C 31.4 2.40e-07 94.1% 65.9%
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.78 56.0 6.39e-01 78.4% 100.0%
1t6jA03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.73 59.0 5.88e-01 84.3% 83.5%
3f0cA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.69 49.0 4.37e-01 74.5% 59.0%
1fnnA01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.68 51.0 5.20e-01 88.2% 80.2%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.68 49.0 5.13e-01 74.5% 93.4%
3tahA02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 39.0 4.15e-01 86.3% 65.9%
2dznF00 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 43.0 4.98e-01 80.4% 97.1%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 47.0 5.19e-01 83.3% 96.3%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 52.0 4.77e-01 87.3% 68.9%
3f8tA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 46.0 3.34e-01 77.5% 83.0%
3whkA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 42.0 4.79e-01 79.4% 97.2%
2ogiB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.62 54.0 4.42e-01 97.1% 81.9%
4a3vB01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 42.0 4.76e-01 80.4% 98.6%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 48.0 4.41e-01 84.3% 64.7%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.61 39.0 4.46e-01 74.5% 97.0%
3l4aA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.60 39.0 3.74e-01 82.4% 55.4%
5hdiA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.60 47.0 3.24e-01 86.3% 58.4%
2i10B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 44.0 4.15e-01 77.5% 68.0%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 41.0 4.06e-01 87.3% 65.2%
1w5sA01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 42.0 4.40e-01 82.4% 83.0%
1eljA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 44.0 3.59e-01 78.4% 100.0%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 43.0 4.68e-01 86.3% 97.6%
3aqlA02 1.10.3090.10 Mainly Alpha › Orthogonal Bundle › cca-adding enzyme, domain 2 › cca-adding enzyme, domain 2 0.59 49.0 3.68e-01 95.1% 37.1%
3clhA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.59 46.0 4.05e-01 83.3% 73.2%
7ekoO01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.58 45.0 3.97e-01 82.4% 91.6%
3zokA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.58 45.0 3.72e-01 83.3% 64.9%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.58 44.0 3.18e-01 79.4% 51.5%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.58 45.0 4.08e-01 83.3% 75.5%
1dj8A00 1.10.890.10 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A 0.58 36.0 4.01e-01 70.6% 81.0%
7uzqK01 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.57 50.0 3.52e-01 100.0% 66.1%
3hzjA03 1.10.472.80 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 0.57 44.0 3.91e-01 82.4% 82.6%
2id3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 43.0 3.92e-01 83.3% 87.3%
3qatA01 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.56 50.0 3.81e-01 100.0% 72.6%
2qguA02 1.10.10.640 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › phospholipid-binding protein 0.55 40.0 4.46e-01 91.2% 100.0%
1y8aA02 1.10.3870.10 Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily 0.55 42.0 4.06e-01 81.4% 95.7%
3o7qA02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.55 42.0 3.52e-01 83.3% 80.7%
3b81A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 46.0 3.81e-01 92.2% 66.7%
7e4mA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.55 47.0 3.60e-01 100.0% 53.0%
1s0pA01 1.25.40.330 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Adenylate cyclase-associated CAP, N-terminal domain 0.54 43.0 3.71e-01 87.3% 88.9%
5z7cA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.54 47.0 3.99e-01 100.0% 69.3%
7e4gA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 46.0 3.79e-01 100.0% 63.5%
2fx0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 38.0 3.55e-01 80.4% 59.1%
2v40A02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.52 37.0 3.93e-01 87.3% 87.5%
2z3tA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 45.0 3.13e-01 100.0% 30.1%
5hiwA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 45.0 3.12e-01 100.0% 62.7%
1ywmA02 1.20.1270.150 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Surface Active Protein 0.52 33.0 3.63e-01 77.5% 84.2%
3ljcA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 37.0 3.43e-01 86.3% 61.1%
3a98A02 1.20.1270.350 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain 0.50 37.0 3.99e-01 87.3% 92.0%
3ug9A02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 44.0 3.50e-01 100.0% 63.1%
2ew2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.50 41.0 3.74e-01 87.3% 70.1%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944791 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.95 78.0 8.36e-01 99.0% 96.7%
4565984 148.1.3.4 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C 0.89 80.0 8.10e-01 100.0% 95.0%
4948085 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.89 80.0 8.14e-01 100.0% 97.0%
3607806 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.88 77.0 7.63e-01 100.0% 88.6%
3398772 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.86 75.0 7.28e-01 100.0% 84.5%
3871672 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.85 73.0 7.14e-01 100.0% 84.5%
4939888 148.1.3.4 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C 0.84 77.0 7.84e-01 98.0% 100.0%
4958530 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.83 78.0 7.73e-01 100.0% 97.1%
4928225 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.83 73.0 7.41e-01 100.0% 95.0%
3586873 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.82 71.0 7.22e-01 100.0% 94.0%
2075049 3787.1.1.0 alpha bundles › HAD superfamily helical bundle insertion domain 0.78 57.0 6.15e-01 85.3% 89.5%
3580700 148.1.3.10 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_6 0.78 70.0 6.97e-01 98.0% 94.3%
3890508 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.75 63.0 6.22e-01 100.0% 85.5%
3560835 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.74 63.0 4.37e-01 100.0% 27.9%
3929606 5054.1.1.1 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan 0.70 44.0 4.02e-01 88.2% 47.4%
3908291 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 61.0 5.65e-01 97.1% 94.6%
1628548 148.1.3.17 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid 0.69 51.0 5.19e-01 76.5% 81.8%
4928781 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.68 62.0 4.16e-01 99.0% 32.4%
3236143 5067.1.1.3 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched 0.68 60.0 4.64e-01 100.0% 63.8%
3960471 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.67 44.0 5.00e-01 80.4% 91.8%
4961964 191.1.1.10 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_6 0.67 50.0 4.71e-01 79.4% 69.6%
4665138 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.67 55.0 5.35e-01 89.2% 82.6%
3547168 148.1.3.17 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid 0.67 54.0 4.96e-01 88.2% 84.4%
3279361 191.1.1.15 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_11 0.66 47.0 5.04e-01 79.4% 88.2%
4988064 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.66 42.0 4.84e-01 75.5% 92.9%
3614 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.65 41.0 4.81e-01 76.5% 92.9%
4947854 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 47.0 4.92e-01 78.4% 83.2%
3953625 191.1.1.48 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_46 0.62 44.0 4.12e-01 72.5% 68.8%
3652523 524.1.1.1 alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC 0.61 48.0 4.22e-01 83.3% 82.7%
3649730 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.61 45.0 4.74e-01 86.3% 88.9%
3618041 5067.1.1.0 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.61 53.0 4.19e-01 100.0% 63.0%
3909225 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.61 47.0 4.59e-01 85.3% 76.4%
4950795 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.60 53.0 4.33e-01 98.0% 78.2%
3940806 524.1.1.1 alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC 0.59 42.0 3.51e-01 84.3% 42.9%
3588943 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.59 51.0 4.85e-01 100.0% 80.8%
3280811 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.56 47.0 3.40e-01 92.2% 63.4%
3287583 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.54 46.0 3.64e-01 95.1% 48.6%
4939361 3896.1.2.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-archaeol synthase 0.54 44.0 3.95e-01 100.0% 62.0%
3319968 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.54 28.0 3.29e-01 73.5% 71.4%
4006568 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.53 42.0 3.94e-01 84.3% 100.0%
3331778 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.53 40.0 3.20e-01 81.4% 73.5%
4045754 110.1.1.18 alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death_Lrrd1 0.52 42.0 4.23e-01 87.3% 96.2%
4957771 5069.1.3.137 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF7521 0.52 36.0 3.81e-01 70.6% 95.6%
3934092 5081.1.1.0 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like 0.52 45.0 3.84e-01 100.0% 80.0%
4100017 210.1.3.3 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.52 47.0 3.43e-01 100.0% 80.4%
3245673 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.51 39.0 3.82e-01 84.3% 86.1%