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H1c1_full_scaffold_271_prodigal-single.1__X__X__00124
Bact-VirH1c1_full_scaffold_271_prodigal-single.1__X__X__00124
Identity
- Kingdom:
- phage
Quality
88.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-49
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 54.0 | 5.08e-01 | 70.2% | 55.2% |
| 4e4yA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.77 | 52.0 | 3.29e-01 | 74.5% | 14.0% |
| 2kwpA00 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.74 | 53.0 | 3.88e-01 | 78.7% | 45.0% |
| 1ou0A00 | 3.40.50.10230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin biosynthesis CobH/CbiC, precorrin-8X methylmutase | 0.73 | 65.0 | 4.28e-01 | 100.0% | 47.4% |
| 2o38A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.69 | 40.0 | 3.59e-01 | 72.3% | 40.0% |
| 4efcA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.67 | 50.0 | 3.75e-01 | 83.0% | 35.5% |
| 2zpaA04 | 1.20.120.890 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA(Met) cytidine acetyltransferase, tail domain | 0.65 | 54.0 | 4.01e-01 | 100.0% | 70.5% |
| 2j62A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.65 | 48.0 | 2.97e-01 | 83.0% | 13.3% |
| 3tw5A02 | 3.30.40.240 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Transglutaminase elicitor, body domain | 0.62 | 44.0 | 3.79e-01 | 78.7% | 47.6% |
| 4nb5B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 50.0 | 4.20e-01 | 93.6% | 87.1% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.61 | 49.0 | 3.56e-01 | 91.5% | 47.1% |
| 4z4qA04 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.61 | 40.0 | 3.39e-01 | 87.2% | 37.1% |
| 4d7rA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.61 | 50.0 | 4.23e-01 | 93.6% | 76.8% |
| 3w6zA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.59 | 40.0 | 3.01e-01 | 72.3% | 87.6% |
| 3djbA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.58 | 45.0 | 3.84e-01 | 97.9% | 59.4% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.58 | 46.0 | 3.65e-01 | 87.2% | 49.0% |
| 1dgjA04 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.55 | 47.0 | 3.30e-01 | 97.9% | 82.9% |
| 3lw7A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 41.0 | 2.88e-01 | 83.0% | 78.2% |
| 4x0qA04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.53 | 46.0 | 3.29e-01 | 100.0% | 54.2% |
| 3vpxB02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 43.0 | 2.87e-01 | 93.6% | 90.5% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5077880 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.76 | 55.0 | 3.89e-01 | 83.0% | 26.7% |
| 3399413 | 243.7.1.0 ↗ | a+b two layers › Cystatin-like › Cytochrome b5-like heme/steroid binding domain › Cytochrome b5-like heme/steroid binding domain | 0.74 | 50.0 | 4.05e-01 | 70.2% | 63.3% |
| 3944622 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.74 | 50.0 | 4.20e-01 | 74.5% | 42.5% |
| 3278996 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 50.0 | 3.94e-01 | 74.5% | 35.0% |
| 3375753 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.71 | 48.0 | 3.22e-01 | 70.2% | 18.6% |
| 3219554 | 103.12.1.0 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain | 0.71 | 46.0 | 4.57e-01 | 70.2% | 62.0% |
| 3730715 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 47.0 | 4.48e-01 | 76.6% | 58.2% |
| 3522732 | 103.1.1.143 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_ARIH2_N | 0.68 | 52.0 | 4.52e-01 | 83.0% | 74.3% |
| 5029280 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.67 | 55.0 | 3.67e-01 | 97.9% | 31.7% |
| 4474302 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.64 | 50.0 | 3.58e-01 | 91.5% | 32.3% |
| 4250419 | 2005.1.1.25 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › HIGH_NTase1 | 0.63 | 54.0 | 3.16e-01 | 100.0% | 17.2% |
| 5049143 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 52.0 | 4.07e-01 | 97.9% | 46.4% |
| 4983598 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 44.0 | 4.08e-01 | 80.9% | 56.9% |
| 5011906 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.62 | 48.0 | 4.58e-01 | 97.9% | 72.7% |
| 5014612 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.60 | 50.0 | 3.60e-01 | 100.0% | 84.9% |
| 4140969 | 102.1.1.38 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RlmN_N | 0.60 | 44.0 | 3.99e-01 | 83.0% | 60.0% |
| 3737238 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.59 | 53.0 | 4.34e-01 | 97.9% | 86.3% |
| 5048987 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 41.0 | 4.02e-01 | 80.9% | 68.5% |
| 5058985 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.58 | 46.0 | 3.35e-01 | 97.9% | 48.8% |